Effective results for Prochlorococcus marinus subsp. marinus str. CCMP1375 (eggnog40)

Summary

Number of putative secreted proteins: 107
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 87 eukaryotic-like domains, contained in 107 proteins (12 high, 95 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
167539.Pro0459(PF16639) (PF01333)ER
167539.Pro1097(PF01789)ER
167539.Pro0930(PF12159)ER
167539.Pro0931(PF10693)ER
167539.Pro0257(PF01716)ER
167539.Pro0267(PF07444)ER
167539.Pro0781(PF09493)(mitochondrial)
167539.Pro0467(PF02507)ER
167539.Pro0461(PF11267)mitochondrial
167539.Pro0077(PF07444)ER; (ER)
167539.Pro1494(PF00283)ER
167539.Pro1810(PF04481)(mitochondrial)
167539.Pro1804(PF01737)ER
167539.Pro1873(PF16166)ER
167539.Pro1601(PF11805)ER
167539.Pro0500(PF11016)ER
167539.Pro1739(PF12046)ER
167539.Pro0507(PF13326)(ER)
167539.Pro0572(PF10716)ER
167539.Pro0573(PF11460)ER
167539.Pro0387(PF08853)(mitochondrial)
167539.Pro0354PF00421(mitochondrial)
167539.Pro0286(PF12600)ER
167539.Pro0586(PF06298)ER; not used
167539.Pro0328(PF00284) (PF00283)
167539.Pro1406(PF11317)(ER)
167539.Pro0131(PF05421)(plastid)
167539.Pro0304(PF02533)(ER); not used
167539.Pro0466(PF01701)ER; not used
167539.Pro0972(PF11152)(plastid)
167539.Pro0357(PF05151)ER; not used
167539.Pro0284(PF02468)ER; not used
167539.Pro0285(PF02532)ER; not used
167539.Pro1763(PF11623)
167539.Pro1169PF00421
167539.Pro1167PF00421
167539.Pro1361(PF13355)
167539.Pro0169(PF11371)
167539.Pro0168(PF10664)
167539.Pro0292(PF11378)
167539.Pro0765(PF11282)
167539.Pro1880(PF00862)
167539.Pro1174PF00421
167539.Pro0885PF00421
167539.Pro0886(PF13911)
167539.Pro0110(PF00504)not used
167539.Pro0330PF02419not used
167539.Pro0628(PF10544)
167539.Pro0752(PF11947)
167539.Pro0249(PF10063)
167539.Pro1566(PF00504)not used
167539.Pro1411(PF08855)
167539.Pro1748(PF05996)
167539.Pro1749(PF05996)
167539.Pro0329(PF00283)not used
167539.Pro0819(PF05996)
167539.Pro0991(PF11210)
167539.Pro0261(PF04483)
167539.Pro0866(PF12527)
167539.Pro1030(PF11347)
167539.Pro0129(PF12095)
167539.Pro0783PF00421
167539.Pro0871(PF12452)
167539.Pro1028(PF11833)
167539.Pro1025(PF12049)
167539.Pro0062(PF07720)
167539.Pro1650(PF11998)
167539.Pro0078(PF00504)
167539.Pro0076(PF06596)not used
167539.Pro0696(PF10544)
167539.Pro1007(PF09493)
167539.Pro1498(PF01744)
167539.Pro1837(PF01947)
167539.Pro1678(PF00796)not used
167539.Pro1679(PF02605)
167539.Pro1672(PF00223)
167539.Pro1673(PF00223)
167539.Pro1253(PF02392)
167539.Pro1255PF00421
167539.Pro0451(PF08854)
167539.Pro0331(PF01788)
167539.Pro1249(PF08041)not used
167539.Pro0950(PF09353)
167539.Pro0982(PF04483)
167539.Pro0940(PF11360)
167539.Pro0894(PF06799)
167539.Pro0892PF00421
167539.Pro1593(PF04839)
167539.Pro1733(PF02531)
167539.Pro1288PF00421
167539.Pro0371(PF02427)
167539.Pro1450PF00421
167539.Pro1638(PF04983)
167539.Pro1639(PF04983)
167539.Pro1637(PF00504)not used
167539.Pro1142(PF02529)not used
167539.Pro0141(PF11910)
167539.Pro0369(PF12899)
167539.Pro1717(PF10999)
167539.Pro1714(PF12617)
167539.Pro1713(PF11909)
167539.Pro1627(PF11341)
167539.Pro0353(PF01405)not used
167539.Pro0283(PF00737)
167539.Pro0776(PF07082)
167539.Pro0918PF03742not used
167539.Pro0919(PF11264)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================