Metamenu

Effective results for Streptomyces sp. C (eggnog40)

Summary

Number of putative secreted proteins: 258
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 62 eukaryotic-like domains, contained in 258 proteins (16 high, 242 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
253839.SSNG_07312(PF02801) (PF00109)ER
253839.SSNG_04983(PF02868) (PF01483)(mitochondrial); (plastid)
253839.SSNG_05970(PF13535)ER
253839.SSNG_06110(PF03098)mitochondrial
253839.SSNG_07451(PF02801) (PF00109)(ER)
253839.SSNG_02178(PF07510)mitochondrial
253839.SSNG_04538(PF01391)(ER); (mitochondrial)
253839.SSNG_06397(PF08386)ER
253839.SSNG_00353(PF08386)ER
253839.SSNG_02986(PF08386)(mitochondrial)
253839.SSNG_04839(PF13349)mitochondrial
253839.SSNG_04157(PF01483)ER
253839.SSNG_07350(PF13349)ER
253839.SSNG_07176(PF07510)ER
253839.SSNG_04712(PF08386)ER; (mitochondrial)
253839.SSNG_04495(PF03704)ER
253839.SSNG_07423(PF03704)ER
253839.SSNG_07429(PF02801) (PF00698) (PF00109)
253839.SSNG_06909PF01453ER
253839.SSNG_06612(PF13535)ER
253839.SSNG_07372(PF13349)ER
253839.SSNG_02436(PF09056)ER
253839.SSNG_06000(PF03807)(mitochondrial)
253839.SSNG_00396PF02450(ER)
253839.SSNG_04462(PF01648)mitochondrial
253839.SSNG_03039(PF11999) (PF01391)(ER)
253839.SSNG_07486(PF02801) (PF00698) (PF00109)
253839.SSNG_07484(PF02801) (PF00698) (PF00109)
253839.SSNG_00582(PF03664)ER
253839.SSNG_06409(PF05977)mitochondrial
253839.SSNG_06420(PF14273)ER
253839.SSNG_04457(PF07250)ER
253839.SSNG_01304(PF17124)ER
253839.SSNG_00673(PF07510)(mitochondrial); (plastid)
253839.SSNG_07091(PF07510)ER
253839.SSNG_06879(PF08007)(mitochondrial)
253839.SSNG_07471(PF02801) (PF00698) (PF00109)
253839.SSNG_07470(PF02801) (PF00698) (PF00109)
253839.SSNG_01287(PF03807)(ER); ER
253839.SSNG_04873(PF05977)(ER); (mitochondrial)
253839.SSNG_01157(PF05977)(mitochondrial)
253839.SSNG_06381(PF03704)(ER)
253839.SSNG_07463(PF02801) (PF00698) (PF00109)not used
253839.SSNG_07464(PF02801) (PF00698) (PF00109)
253839.SSNG_07465(PF02801) (PF00698) (PF00109)
253839.SSNG_02671(PF05977)mitochondrial; (mitochondrial)
253839.SSNG_06097(PF08386)ER
253839.SSNG_01019(PF08386)ER; (ER)
253839.SSNG_02054PF01453mitochondrial
253839.SSNG_07532(PF11999)mitochondrial
253839.SSNG_00010(PF03704)mitochondrial
253839.SSNG_05778(PF02868)mitochondrial; plastid
253839.SSNG_05779(PF02868)ER
253839.SSNG_00087(PF05977)(ER)
253839.SSNG_02715(PF01391)ER
253839.SSNG_07491(PF02801) (PF00698) (PF00109)
253839.SSNG_00612(PF01094)(mitochondrial)
253839.SSNG_07493(PF02801) (PF00698) (PF00109)
253839.SSNG_07492(PF02801) (PF00698) (PF00109)
253839.SSNG_07496(PF02801) (PF00698) (PF00109)not used
253839.SSNG_07264(PF07510)ER
253839.SSNG_06359(PF10138)ER
253839.SSNG_06032(PF04862)mitochondrial
253839.SSNG_04625(PF01483)(ER); ER
253839.SSNG_02507(PF03807)mitochondrial
253839.SSNG_06327(PF03704)mitochondrial; (mitochondrial)
253839.SSNG_07466(PF02801) (PF00698) (PF00109)
253839.SSNG_06854(PF00388)(ER)
253839.SSNG_06171(PF03807)(mitochondrial)
253839.SSNG_01833(PF14273)ER
253839.SSNG_01834(PF14273)ER
253839.SSNG_06437(PF01648)mitochondrial
253839.SSNG_00276(PF14494)ER
253839.SSNG_02357(PF00334)(mitochondrial)
253839.SSNG_07392(PF00587) PF02403
253839.SSNG_04486(PF02801) (PF00109)
253839.SSNG_04485(PF00109)(ER)
253839.SSNG_07313(PF02801) (PF00109)
253839.SSNG_00655(PF02801) (PF00109)
253839.SSNG_03609(PF00587) PF02403
253839.SSNG_06610(PF00587) PF02403
253839.SSNG_06344(PF05977)(ER)
253839.SSNG_03051(PF01391)(plastid)
253839.SSNG_06428(PF13535)(ER)
253839.SSNG_05493(PF13350)plastid
253839.SSNG_05613PF03018ER
253839.SSNG_06810(PF14078) (PF09346)
253839.SSNG_07125(PF00109)(ER)
253839.SSNG_07126(PF02801) (PF00109)
253839.SSNG_03218(PF00587) PF02403
253839.SSNG_07462(PF02801) (PF00109)
253839.SSNG_05410(PF02801) (PF00109)
253839.SSNG_02464PF00036 (PF13499)
253839.SSNG_07341(PF02801) (PF00109)
253839.SSNG_00654(PF02801) (PF00109)
253839.SSNG_02218(PF02801) (PF00109)
253839.SSNG_06357(PF03807)(mitochondrial)
253839.SSNG_04474(PF02801) (PF00109)
253839.SSNG_04473(PF02801) (PF00109)
253839.SSNG_04471(PF02801) (PF00109)
253839.SSNG_07340(PF02801) (PF00109)
253839.SSNG_05955(PF02801) (PF00109)
253839.SSNG_06864(PF05977)
253839.SSNG_00040(PF03704)
253839.SSNG_07431(PF10014)
253839.SSNG_01124(PF08007)
253839.SSNG_02961(PF07884)
253839.SSNG_06809(PF01337)
253839.SSNG_01467PF01453
253839.SSNG_02021(PF12138)
253839.SSNG_07456(PF03704)
253839.SSNG_00071PF00168
253839.SSNG_01853(PF10138)
253839.SSNG_00433(PF02868)
253839.SSNG_02274(PF00587)
253839.SSNG_00159(PF04107)
253839.SSNG_06775(PF01337)
253839.SSNG_05644(PF01648)
253839.SSNG_01305(PF02148)
253839.SSNG_07398(PF09924)
253839.SSNG_03455(PF08007)
253839.SSNG_00601(PF00334)
253839.SSNG_01186(PF04107)
253839.SSNG_03912(PF13563)
253839.SSNG_03913(PF05977)
253839.SSNG_00330(PF13563)
253839.SSNG_06966(PF03704)
253839.SSNG_07354(PF00698)
253839.SSNG_07355(PF00109)not used
253839.SSNG_06084(PF03098)
253839.SSNG_06945(PF05977)
253839.SSNG_04179(PF09346)
253839.SSNG_04178(PF01337)
253839.SSNG_06544(PF05977)
253839.SSNG_04494(PF03704)
253839.SSNG_04789(PF02148)
253839.SSNG_03319(PF01129)
253839.SSNG_07318(PF01648)
253839.SSNG_02239(PF04107)
253839.SSNG_06049PF02450
253839.SSNG_05150(PF00587)
253839.SSNG_07501(PF00264)
253839.SSNG_07506(PF00109)
253839.SSNG_07505(PF02801)not used
253839.SSNG_03431(PF10138)
253839.SSNG_02215(PF00698)
253839.SSNG_07337(PF03704)
253839.SSNG_06067(PF13349)
253839.SSNG_06063(PF04107)
253839.SSNG_07190PF01453
253839.SSNG_01041(PF02801)
253839.SSNG_05292(PF03644)
253839.SSNG_02438(PF01648)
253839.SSNG_00958(PF01184)
253839.SSNG_06658(PF03457)
253839.SSNG_00729(PF09414)
253839.SSNG_00727(PF04928)not used
253839.SSNG_00725(PF09414)
253839.SSNG_05715(PF01014)
253839.SSNG_07450(PF00698)
253839.SSNG_04098(PF13349)
253839.SSNG_07278(PF03457)
253839.SSNG_00976(PF13535)
253839.SSNG_00970(PF15891)
253839.SSNG_02858(PF09346)
253839.SSNG_04466(PF00698)
253839.SSNG_04468(PF01648)
253839.SSNG_06281(PF03457)
253839.SSNG_04610(PF10014)
253839.SSNG_07254(PF13563)
253839.SSNG_07303(PF03704)
253839.SSNG_04059(PF03704)
253839.SSNG_02065(PF13350)
253839.SSNG_06366(PF13535)
253839.SSNG_04710(PF12138)
253839.SSNG_06429(PF13535)
253839.SSNG_05217(PF00587)
253839.SSNG_00486(PF02148)
253839.SSNG_06169(PF04107)
253839.SSNG_03095(PF03807)
253839.SSNG_01821(PF13499)
253839.SSNG_06224(PF09511)
253839.SSNG_06142(PF09924)
253839.SSNG_03417(PF01014)
253839.SSNG_02238(PF05977)
253839.SSNG_07319(PF00698)
253839.SSNG_06469(PF08386)
253839.SSNG_03965(PF13499)
253839.SSNG_00050(PF06101)
253839.SSNG_04254(PF01648)
253839.SSNG_06260(PF00264)
253839.SSNG_02105(PF03807)
253839.SSNG_02362(PF07884)
253839.SSNG_01289(PF17124)
253839.SSNG_00001(PF03457)
253839.SSNG_05635(PF13350)
253839.SSNG_03776(PF00388)
253839.SSNG_07446(PF01648)
253839.SSNG_06715(PF03704)
253839.SSNG_06714(PF03704)
253839.SSNG_05435(PF01648)
253839.SSNG_05437(PF03704)
253839.SSNG_03172(PF09924)
253839.SSNG_06839(PF00542)
253839.SSNG_01380(PF00587)
253839.SSNG_07468(PF00698)not used
253839.SSNG_05935(PF13350)
253839.SSNG_05397(PF03704)
253839.SSNG_05411(PF00109)
253839.SSNG_00282(PF13499)
253839.SSNG_03739(PF09346)
253839.SSNG_02286(PF02868)
253839.SSNG_00348(PF01337)
253839.SSNG_07469(PF00698)
253839.SSNG_00116(PF09346)
253839.SSNG_01053(PF02868)not used
253839.SSNG_04802(PF13349)
253839.SSNG_06951(PF03807)
253839.SSNG_00799(PF00264)
253839.SSNG_04203(PF00542)
253839.SSNG_00860(PF12138)
253839.SSNG_07147(PF13563)
253839.SSNG_01010(PF03704)
253839.SSNG_00659(PF13582)
253839.SSNG_07302(PF03704)
253839.SSNG_00678(PF01483)
253839.SSNG_03328(PF03704)
253839.SSNG_00533(PF04107)
253839.SSNG_00532(PF13499)
253839.SSNG_00538(PF03664)
253839.SSNG_06277(PF00264)
253839.SSNG_06273(PF01483)
253839.SSNG_03270(PF00542)
253839.SSNG_03232(PF08007)
253839.SSNG_04347(PF13563)
253839.SSNG_06251(PF09346)
253839.SSNG_05430(PF01648)not used
253839.SSNG_07287(PF03704)
253839.SSNG_02011(PF09924)
253839.SSNG_06629(PF13535)
253839.SSNG_07495(PF00698)not used
253839.SSNG_07494(PF00109)
253839.SSNG_00383(PF13535)
253839.SSNG_05074(PF13350)
253839.SSNG_00598(PF00334)
253839.SSNG_07117(PF05977)
253839.SSNG_07246(PF14078)
253839.SSNG_02501(PF01184)
253839.SSNG_06998(PF09056)
253839.SSNG_01355(PF07884)
253839.SSNG_05194(PF01391)
253839.SSNG_05192(PF13653)
253839.SSNG_06766(PF01184)
253839.SSNG_06848PF02450
253839.SSNG_01311(PF01337)
253839.SSNG_05007PF00036
253839.SSNG_06741PF00241
253839.SSNG_00476(PF03704)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================