Effective results for Bdellovibrio bacteriovorus HD100 (eggnog40)

Summary

Number of putative secreted proteins: 93
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 32 eukaryotic-like domains, contained in 93 proteins (22 high, 71 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
264462.Bd2644				(PF00415) (PF13540)	ER
264462.Bd3390				(PF00415) (PF13540)	ER
264462.Bd1137				(PF00415) (PF13540)	ER
264462.Bd1921				(PF00415) (PF13540)	ER
264462.Bd2630				(PF00089)	ER
264462.Bd0417				(PF13174)	ER
264462.Bd3220				(PF00089)	ER
264462.Bd3266				PF13884	ER
264462.Bd3267				PF13884	ER
264462.Bd2332				(PF00089)	(ER)
264462.Bd2486				(PF13540)	ER
264462.Bd0884				PF13884	ER
264462.Bd2923				(PF00089)	(ER)
264462.Bd1623				PF00431 (PF13540)	(mitochondrial)
264462.Bd2579				(PF00147)	ER
264462.Bd3840				(PF13174)	ER
264462.Bd3442				(PF00622)	ER
264462.Bd1204				(PF14566)	ER
264462.Bd2936				(PF05090)	ER
264462.Bd0635				(PF13174)	ER
264462.Bd1359				(PF00089)	ER
264462.Bd2019				PF06963	ER; (ER)
264462.Bd1898				(PF00089)	(ER)
264462.Bd3829				(PF13174)	ER
264462.Bd1533				(PF12471)	(mitochondrial)
264462.Bd3482				(PF00089)	ER
264462.Bd1959				(PF09949)	ER
264462.Bd3100				(PF14237)	(mitochondrial)
264462.Bd3611				(PF00839)	ER
264462.Bd1427				(PF00112)	ER
264462.Bd1043				(PF00089)	mitochondrial; (mitochondrial)
264462.Bd0078				(PF14771)	ER
264462.Bd0072				(PF00089)	ER
264462.Bd3551				(PF05761)	mitochondrial
264462.Bd1449				(PF13540)	ER
264462.Bd3137				(PF16313)	(ER)
264462.Bd2535				(PF00089)	ER
264462.Bd1719				(PF00839)	ER
264462.Bd0629				(PF00089)	ER
264462.Bd1712				PF13884	ER
264462.Bd1841				(PF16313)	ER
264462.Bd2711				(PF13174)	ER
264462.Bd2088				PF13884	ER
264462.Bd2548				PF13884	mitochondrial
264462.Bd0704				PF13884	ER
264462.Bd0705				PF13884	ER
264462.Bd0832				(PF13174)	ER; (ER)
264462.Bd0029				PF00431	ER; (ER)
264462.Bd1391				(PF00089)	ER
264462.Bd0607				(PF16313)	ER
264462.Bd1541				(PF00089)	ER
264462.Bd1130				PF13884	ER
264462.Bd0035				(PF00089)	ER
264462.Bd2851				(PF14273)	ER
264462.Bd3415				(PF00089)	ER
264462.Bd2474				(PF09976)	ER
264462.Bd1247				(PF00415)	mitochondrial; ER
264462.Bd2821				(PF03984)	ER
264462.Bd3247				(PF00112)	ER
264462.Bd0977				(PF09949)	ER
264462.Bd2582				PF13884	ER
264462.Bd2581				(PF00147)	ER
264462.Bd0564				(PF00089)	ER
264462.Bd3182				PF13884	ER
264462.Bd2937				(PF05090)	(ER)
264462.Bd1979				(PF05090)	(ER)
264462.Bd3481				(PF00089)	(mitochondrial)
264462.Bd2106				(PF04187)	(mitochondrial)
264462.Bd3409				(PF09976) (PF13174)
264462.Bd1175				(PF08732)
264462.Bd0312				PF02527
264462.Bd2030				(PF09976)
264462.Bd0437				(PF05090)
264462.Bd2951				(PF00163)
264462.Bd1636				PF02527
264462.Bd0451				(PF01980)
264462.Bd1532				(PF07958)
264462.Bd0055				PF00808
264462.Bd2565				PF13884
264462.Bd3112				(PF00163)
264462.Bd3119				(PF13174)
264462.Bd3908				PF02527
264462.Bd2865				PF09239
264462.Bd2864				PF04406
264462.Bd0706				(PF00089)
264462.Bd2256				(PF01980)
264462.Bd2410				(PF04187)
264462.Bd3734				(PF00025)
264462.Bd1641				PF13884
264462.Bd1482				(PF14237)
264462.Bd1731				(PF01980)
264462.Bd2850				(PF14273)
264462.Bd2105				(PF14237)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================