Effective results for Rubrobacter xylanophilus DSM 9941 (eggnog40)

Summary

Number of putative secreted proteins: 55
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 19 eukaryotic-like domains, contained in 55 proteins (1 high, 54 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
266117.Rxyl_0520				(PF13551)	(mitochondrial)
266117.Rxyl_1936				(PF13469)	(ER)
266117.Rxyl_1241				(PF11028)	(ER)
266117.Rxyl_2683				(PF13469)	(ER); (mitochondrial)
266117.Rxyl_3105				(PF13469)	mitochondrial
266117.Rxyl_3104				(PF13469)	mitochondrial
266117.Rxyl_2987				(PF09861)	mitochondrial
266117.Rxyl_2361				(PF12483)	ER
266117.Rxyl_0935				(PF11028)	(ER); ER
266117.Rxyl_0562				(PF13469)	(ER)
266117.Rxyl_3067				(PF13551)	(mitochondrial)
266117.Rxyl_0352				(PF04199)	(plastid)
266117.Rxyl_1258				(PF13551)	(mitochondrial)
266117.Rxyl_0932				(PF11028)	(ER)
266117.Rxyl_0367				(PF04199)
266117.Rxyl_0766				(PF01268)
266117.Rxyl_0165				(PF01592)
266117.Rxyl_0181				(PF04893)
266117.Rxyl_1568				(PF01268)
266117.Rxyl_1567				(PF04961)
266117.Rxyl_1566				(PF02882)
266117.Rxyl_2859				(PF04893)
266117.Rxyl_1919				(PF13551)
266117.Rxyl_1354				(PF01592)
266117.Rxyl_2998				(PF09861)
266117.Rxyl_1120				(PF05706)
266117.Rxyl_2693				(PF13469)
266117.Rxyl_2272				(PF04199)
266117.Rxyl_3097				(PF13469)
266117.Rxyl_0688				(PF07994)
266117.Rxyl_1933				(PF13469)
266117.Rxyl_0827				(PF02882)
266117.Rxyl_0788				(PF00643)
266117.Rxyl_1785				PF00627
266117.Rxyl_2107				(PF09861)
266117.Rxyl_2245				(PF04199)
266117.Rxyl_1870				(PF04199)
266117.Rxyl_3108				(PF13469)
266117.Rxyl_2407				(PF04199)
266117.Rxyl_0486				(PF14791)
266117.Rxyl_2646				(PF04199)
266117.Rxyl_2519				(PF01268)
266117.Rxyl_2518				(PF04961)
266117.Rxyl_2517				(PF02882)
266117.Rxyl_0230				(PF14791)
266117.Rxyl_1213				(PF07994)
266117.Rxyl_1434				(PF10571)
266117.Rxyl_2194				(PF01592)
266117.Rxyl_0722				(PF13469)
266117.Rxyl_2761				(PF04893)
266117.Rxyl_2112				(PF03015)
266117.Rxyl_1946				(PF13469)
266117.Rxyl_1769				(PF03243)
266117.Rxyl_1768				(PF03243)
266117.Rxyl_0977				(PF01592)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================