Metamenu

Effective results for Synechococcus sp. RCC307 (eggnog40)

Summary

Number of putative secreted proteins: 141
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 105 eukaryotic-like domains, contained in 141 proteins (16 high, 125 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
316278.SynRCC307_0703(PF16639) (PF01333)ER
316278.SynRCC307_0304(PF06514)ER
316278.SynRCC307_2317(PF13301)ER
316278.SynRCC307_2175(PF09366)mitochondrial; (mitochondrial)
316278.SynRCC307_0321(PF13911)ER
316278.SynRCC307_1955PF00504(mitochondrial); (plastid)
316278.SynRCC307_2195(PF01716)mitochondrial
316278.SynRCC307_2211(PF07444)ER
316278.SynRCC307_2202(PF04483)(mitochondrial)
316278.SynRCC307_0878(PF13326)mitochondrial
316278.SynRCC307_0476(PF11317)ER
316278.SynRCC307_2519(PF16166)ER
316278.SynRCC307_1601(PF11460)ER
316278.SynRCC307_1602(PF10716)ER
316278.SynRCC307_0079(PF01737)ER
316278.SynRCC307_0344(PF07444)ER
316278.SynRCC307_2081(PF12046)ER
316278.SynRCC307_1284(PF05996)ER
316278.SynRCC307_0710(PF02507)ER
316278.SynRCC307_1873(PF11805)ER
316278.SynRCC307_1876(PF13759)ER
316278.SynRCC307_0842(PF13301)ER
316278.SynRCC307_1387(PF12159)ER
316278.SynRCC307_0705(PF11267)ER
316278.SynRCC307_2115(PF11909)(mitochondrial)
316278.SynRCC307_2114(PF12617)ER; (ER)
316278.SynRCC307_1008(PF12452)(mitochondrial)
316278.SynRCC307_1749(PF04685)ER
316278.SynRCC307_1748(PF04685)mitochondrial
316278.SynRCC307_0575(PF13301)ER
316278.SynRCC307_1694(PF02392)mitochondrial
316278.SynRCC307_2334(PF12600)ER
316278.SynRCC307_1911PF05019(mitochondrial)
316278.SynRCC307_0885(PF11016)ER
316278.SynRCC307_1540(PF06298)ER; not used
316278.SynRCC307_2310(PF02533)ER; not used
316278.SynRCC307_0209(PF00283)(ER); not used
316278.SynRCC307_0210(PF00284) (PF00283)
316278.SynRCC307_1187(PF01744)(ER)
316278.SynRCC307_0343(PF06596)ER; not used
316278.SynRCC307_2337(PF02468)ER; not used
316278.SynRCC307_0889(PF00140)plastid
316278.SynRCC307_1212(PF09996)
316278.SynRCC307_0949(PF11833)
316278.SynRCC307_0894(PF08854)
316278.SynRCC307_0098(PF00140)
316278.SynRCC307_0236(PF11371)
316278.SynRCC307_0237(PF10664)
316278.SynRCC307_0431(PF00140)
316278.SynRCC307_2318(PF09366)
316278.SynRCC307_2009(PF00124)
316278.SynRCC307_2008(PF09996)
316278.SynRCC307_1971(PF11998)
316278.SynRCC307_1554(PF10674)
316278.SynRCC307_0207(PF01788)
316278.SynRCC307_0208PF02419not used
316278.SynRCC307_0447(PF12899)
316278.SynRCC307_2019(PF02943)
316278.SynRCC307_1942(PF11341)
316278.SynRCC307_1520PF00504
316278.SynRCC307_1525PF00504
316278.SynRCC307_1526(PF13759)
316278.SynRCC307_0451(PF02427)
316278.SynRCC307_1958(PF00562)
316278.SynRCC307_1959(PF00562)
316278.SynRCC307_1956(PF04983)
316278.SynRCC307_1957(PF04983)
316278.SynRCC307_1313(PF11282)
316278.SynRCC307_1407PF03742not used
316278.SynRCC307_1405(PF11264)
316278.SynRCC307_0136(PF11623)not used
316278.SynRCC307_0269(PF11910)
316278.SynRCC307_0464(PF08853)
316278.SynRCC307_0740(PF14159)
316278.SynRCC307_1981PF00504
316278.SynRCC307_1324(PF11947)
316278.SynRCC307_2183(PF00124)
316278.SynRCC307_0802(PF01789)
316278.SynRCC307_1192(PF09353)
316278.SynRCC307_1199(PF02672)
316278.SynRCC307_1609(PF00140)
316278.SynRCC307_2504(PF00140)
316278.SynRCC307_2439(PF00140)
316278.SynRCC307_1855(PF02941)
316278.SynRCC307_0073(PF04481)
316278.SynRCC307_0347PF00504
316278.SynRCC307_0259(PF00124)
316278.SynRCC307_0496PF05019
316278.SynRCC307_1704(PF00140)
316278.SynRCC307_1707(PF13355)
316278.SynRCC307_2087(PF02531)
316278.SynRCC307_2401(PF01947)
316278.SynRCC307_1287(PF11347)
316278.SynRCC307_1440(PF00124)
316278.SynRCC307_1441(PF00124)
316278.SynRCC307_1449(PF12049)
316278.SynRCC307_1061PF05019
316278.SynRCC307_1477(PF11210)
316278.SynRCC307_1386(PF10693)
316278.SynRCC307_0709(PF01701)not used
316278.SynRCC307_1495PF16865
316278.SynRCC307_1496(PF10063)
316278.SynRCC307_0520PF00504
316278.SynRCC307_2061(PF05996)
316278.SynRCC307_2062(PF05996)
316278.SynRCC307_1863(PF04839)
316278.SynRCC307_1001(PF12527)
316278.SynRCC307_0734(PF02529)not used
316278.SynRCC307_0282(PF05421)
316278.SynRCC307_1487(PF04483)
316278.SynRCC307_1811(PF00140)
316278.SynRCC307_2296(PF03492)
316278.SynRCC307_2104(PF14159)
316278.SynRCC307_2109(PF10999)
316278.SynRCC307_0035(PF00070)
316278.SynRCC307_0290(PF12095)
316278.SynRCC307_2042(PF06206)
316278.SynRCC307_1806(PF08855)
316278.SynRCC307_0370PF00504not used
316278.SynRCC307_2053PF00514
316278.SynRCC307_1230(PF11152)
316278.SynRCC307_1233(PF03040)
316278.SynRCC307_1343(PF07082)
316278.SynRCC307_0983(PF06799)
316278.SynRCC307_1690PF02005
316278.SynRCC307_1695(PF00124)
316278.SynRCC307_0361(PF02672)
316278.SynRCC307_0417(PF01405)not used
316278.SynRCC307_2338(PF00737)
316278.SynRCC307_2335(PF02532)not used
316278.SynRCC307_2158(PF00223)
316278.SynRCC307_2153(PF00796)not used
316278.SynRCC307_2154(PF02605)
316278.SynRCC307_2157(PF00223)
316278.SynRCC307_1358(PF11360)
316278.SynRCC307_0953PF05019
316278.SynRCC307_1689(PF08041)not used
316278.SynRCC307_1576(PF08847)
316278.SynRCC307_0420(PF05151)not used
316278.SynRCC307_2033(PF06206)
316278.SynRCC307_2326(PF11378)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================