Metamenu

Effective results for Synechococcus sp. CC9902 (eggnog40)

Summary

Number of putative secreted proteins: 128
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 100 eukaryotic-like domains, contained in 128 proteins (7 high, 121 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
316279.Syncc9902_1735(PF16639) (PF01333)ER
316279.Syncc9902_0418(PF07444)ER
316279.Syncc9902_2059(PF07444)ER
316279.Syncc9902_2045(PF01716)ER
316279.Syncc9902_2049(PF04483)(mitochondrial)
316279.Syncc9902_1666(PF13326)mitochondrial
316279.Syncc9902_0356(PF06514)ER
316279.Syncc9902_0759(PF13911)mitochondrial; (mitochondrial)
316279.Syncc9902_1924(PF12046)ER
316279.Syncc9902_1072(PF12159)ER
316279.Syncc9902_1073(PF10693)(ER)
316279.Syncc9902_0779(PF12452)ER
316279.Syncc9902_1440(PF11196)ER
316279.Syncc9902_0493(PF11805)ER; (ER)
316279.Syncc9902_0490(PF13759)(ER)
316279.Syncc9902_0868(PF01744)(ER)
316279.Syncc9902_0266(PF02533)ER
316279.Syncc9902_1728(PF02507)ER
316279.Syncc9902_1400(PF01789)ER
316279.Syncc9902_1155(PF04483)(mitochondrial); mitochondrial
316279.Syncc9902_1142(PF11152)mitochondrial; ER
316279.Syncc9902_2305(PF16166)(ER); ER
316279.Syncc9902_1426PF06298ER
316279.Syncc9902_0895(PF11460)ER
316279.Syncc9902_0894(PF10716)ER
316279.Syncc9902_1599(PF12204)(mitochondrial)
316279.Syncc9902_0574(PF11317)ER
316279.Syncc9902_0082(PF01737)ER
316279.Syncc9902_1564(PF09996)(mitochondrial)
316279.Syncc9902_0365(PF11196)ER
316279.Syncc9902_0419(PF06596)ER; not used
316279.Syncc9902_0177(PF11623)(plastid)
316279.Syncc9902_0209(PF02348)(mitochondrial)
316279.Syncc9902_1004PF06298ER; not used
316279.Syncc9902_0226(PF00283)(ER); not used
316279.Syncc9902_0227(PF00284) (PF00283)
316279.Syncc9902_1673(PF11016)(ER)
316279.Syncc9902_1317(PF07082)(mitochondrial)
316279.Syncc9902_2082(PF02468)ER; not used
316279.Syncc9902_0462(PF02348)(mitochondrial)
316279.Syncc9902_1842PF02427(mitochondrial)
316279.Syncc9902_0075(PF04481)(mitochondrial)
316279.Syncc9902_0738(PF13759)(ER)
316279.Syncc9902_0092(PF02348)(plastid)
316279.Syncc9902_1109(PF09353)
316279.Syncc9902_1030(PF00504)
316279.Syncc9902_0415(PF00504)
316279.Syncc9902_2027(PF09366)
316279.Syncc9902_1947(PF10999)
316279.Syncc9902_0515(PF02941)
316279.Syncc9902_1821(PF10063)
316279.Syncc9902_1910(PF06206)
316279.Syncc9902_0839(PF06799)
316279.Syncc9902_0342(PF05421)
316279.Syncc9902_0345(PF12095)
316279.Syncc9902_1906(PF05996)
316279.Syncc9902_1907(PF05996)
316279.Syncc9902_1126(PF09996)
316279.Syncc9902_0722(PF14159)
316279.Syncc9902_1930(PF02531)
316279.Syncc9902_0224(PF01788)
316279.Syncc9902_0225PF02419not used
316279.Syncc9902_0100(PF02348)
316279.Syncc9902_1060(PF10013)not used
316279.Syncc9902_1256(PF11347)
316279.Syncc9902_1253(PF05996)
316279.Syncc9902_0328(PF11910)
316279.Syncc9902_2093(PF11378)
316279.Syncc9902_0784(PF12527)
316279.Syncc9902_1814(PF00124)
316279.Syncc9902_1817(PF00124)
316279.Syncc9902_1441PF02427
316279.Syncc9902_2084(PF02532)not used
316279.Syncc9902_2085(PF12600)
316279.Syncc9902_2081(PF00737)
316279.Syncc9902_1862(PF05151)not used
316279.Syncc9902_1865(PF01405)not used
316279.Syncc9902_1300(PF11947)
316279.Syncc9902_0873(PF13759)
316279.Syncc9902_0274(PF09366)
316279.Syncc9902_1056PF03742not used
316279.Syncc9902_1058(PF11264)
316279.Syncc9902_0864(PF08417)
316279.Syncc9902_1518(PF13355)
316279.Syncc9902_0643(PF08853)
316279.Syncc9902_1733(PF11267)
316279.Syncc9902_1991(PF00796)not used
316279.Syncc9902_1992(PF02605)
316279.Syncc9902_1995(PF00223)
316279.Syncc9902_1994(PF00223)
316279.Syncc9902_1847(PF12899)
316279.Syncc9902_1193(PF12049)
316279.Syncc9902_1196(PF11833)
316279.Syncc9902_0717a(PF02529)not used
316279.Syncc9902_0673PF02005
316279.Syncc9902_0674(PF08041)not used
316279.Syncc9902_1726(PF00504)
316279.Syncc9902_1729(PF01701)not used
316279.Syncc9902_0297(PF10664)
316279.Syncc9902_0296(PF11371)
316279.Syncc9902_2199(PF01947)
316279.Syncc9902_0934(PF08854)
316279.Syncc9902_0668(PF00124)
316279.Syncc9902_0669(PF02392)
316279.Syncc9902_1887(PF06206)
316279.Syncc9902_0943(PF00124)
316279.Syncc9902_1413(PF10674)
316279.Syncc9902_0619(PF11341)
316279.Syncc9902_0439(PF01786)
316279.Syncc9902_1094(PF11360)
316279.Syncc9902_1145(PF03040)
316279.Syncc9902_0606(PF04983)
316279.Syncc9902_0607(PF04983)
316279.Syncc9902_1953(PF11909)
316279.Syncc9902_1952(PF12617)
316279.Syncc9902_0317(PF00124)
316279.Syncc9902_1942(PF14159)
316279.Syncc9902_0566(PF08855)
316279.Syncc9902_0093(PF02348)
316279.Syncc9902_1164(PF11210)
316279.Syncc9902_1281(PF11282)
316279.Syncc9902_0629(PF09366)
316279.Syncc9902_1626(PF08847)
316279.Syncc9902_0403(PF02943)
316279.Syncc9902_2222(PF00504)
316279.Syncc9902_2036(PF00124)
316279.Syncc9902_0368(PF00504)not used
316279.Syncc9902_0502(PF04839)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================