Metamenu

Effective results for Magnetospirillum magneticum AMB-1 (eggnog40)

Summary

Number of putative secreted proteins: 261
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 26 eukaryotic-like domains, contained in 261 proteins (40 high, 221 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
342108.amb4156PF01814 (PF00015)ER
342108.amb1682PF01814 (PF00027)ER
342108.amb0220PF01814 (PF00015)ER
342108.amb3380(PF00027)(ER)
342108.amb1395(PF02239)ER
342108.amb4146(PF13426)ER; (mitochondrial)
342108.amb1139(PF14252)(mitochondrial)
342108.amb1868(PF00015)mitochondrial; (mitochondrial)
342108.amb3701(PF00015)ER
342108.amb3899(PF00015)ER
342108.amb3897(PF00015)ER
342108.amb1578(PF00015)ER
342108.amb1032(PF13276)(mitochondrial)
342108.amb3252PF05641ER
342108.amb2104(PF00015)(mitochondrial)
342108.amb2821(PF00015)ER
342108.amb2826(PF00015)ER
342108.amb0406(PF01527)(mitochondrial); plastid
342108.amb3067(PF00015)ER
342108.amb0088(PF02348)mitochondrial; (mitochondrial)
342108.amb0994(PF00015)ER
342108.amb0992(PF00216)mitochondrial
342108.amb2134(PF00015)(ER)
342108.amb4008(PF00015)(ER)
342108.amb3275(PF14252) (PF16184)(ER)
342108.amb1163(PF00216)mitochondrial; (mitochondrial)
342108.amb0366(PF00216)mitochondrial; (mitochondrial)
342108.amb3690(PF00015)ER
342108.amb3054(PF00015)ER; (ER)
342108.amb3467(PF00015)ER
342108.amb3991(PF00015)ER
342108.amb0967(PF16916)(ER)
342108.amb1221(PF00027)(mitochondrial)
342108.amb2930(PF13426)ER
342108.amb4076(PF00015)ER; mitochondrial
342108.amb3689(PF13426)ER
342108.amb0882PF09459ER
342108.amb1214(PF13426)(mitochondrial)
342108.amb1217(PF00015)ER
342108.amb0091(PF02348)mitochondrial; (mitochondrial)
342108.amb3323(PF01527)(mitochondrial); mitochondrial
342108.amb0235(PF14021)ER
342108.amb0236(PF14021)ER
342108.amb3536(PF13426)(mitochondrial)
342108.amb3535(PF00027)ER; (ER)
342108.amb3151(PF13276)mitochondrial
342108.amb2788(PF00015)ER
342108.amb3016PF09459mitochondrial
342108.amb3264(PF13276)mitochondrial
342108.amb0854(PF00015)ER
342108.amb1538(PF00015)ER
342108.amb0133(PF02348)mitochondrial
342108.amb1402(PF02239)(mitochondrial)
342108.amb1408(PF02239)mitochondrial; (mitochondrial)
342108.amb3318(PF01527)(mitochondrial); plastid
342108.amb0263(PF00015)mitochondrial
342108.amb0463PF10571ER
342108.amb2196(PF00015)ER
342108.amb0586(PF00015)ER
342108.amb3578(PF00027)(ER)
342108.amb3806(PF02348)(mitochondrial)
342108.amb3804(PF00015)(mitochondrial)
342108.amb1984(PF00015)(mitochondrial)
342108.amb3970(PF00015)ER
342108.amb0647(PF13276)mitochondrial
342108.amb0245(PF00015)ER
342108.amb2739PF01814ER
342108.amb2644(PF13426)ER
342108.amb3901(PF00015)ER
342108.amb2652(PF00015)ER
342108.amb2291(PF13426)ER
342108.amb4168(PF02348)(mitochondrial); (plastid)
342108.amb4165(PF02239)ER
342108.amb0718(PF02348)(mitochondrial)
342108.amb2660(PF00015)ER
342108.amb0823(PF13426)ER
342108.amb3423(PF13426)(plastid)
342108.amb1397(PF00027)(ER)
342108.amb3894(PF13426)(ER)
342108.amb3095PF01814 (PF00027)
342108.amb3277(PF14252) (PF16184)
342108.amb2023(PF00216)(ER)
342108.amb4276(PF00622)plastid
342108.amb3267PF01814 (PF00015)
342108.amb0554(PF00015)(mitochondrial)
342108.amb3327(PF01527)(plastid)
342108.amb3324(PF13276)(mitochondrial)
342108.amb3015PF09459(ER)
342108.amb3791(PF13844)(mitochondrial)
342108.amb0356PF10571(mitochondrial)
342108.amb0687(PF13844)(ER)
342108.amb3577(PF00027)(ER)
342108.amb3793PF01814 (PF00015)
342108.amb1041(PF13276) (PF01527)
342108.amb0648(PF13276)(plastid)
342108.amb4004(PF00216)(mitochondrial)
342108.amb3354(PF00015)(ER)
342108.amb4154(PF13426)
342108.amb1109(PF13426)
342108.amb4025(PF01498)
342108.amb4538(PF00027)
342108.amb1725(PF01527)
342108.amb1726(PF13276)
342108.amb3383(PF00015)
342108.amb3387(PF13426)
342108.amb1872(PF13426)
342108.amb3748(PF13431)
342108.amb3736(PF00027)
342108.amb1396(PF00027)
342108.amb1398PF09459
342108.amb2286(PF00015)
342108.amb4039(PF13276)
342108.amb4038(PF01527)
342108.amb1007(PF16916)
342108.amb2277(PF13426)
342108.amb2333(PF00015)
342108.amb2079(PF00216)
342108.amb1924(PF13276)
342108.amb2850(PF13426)
342108.amb1252(PF13426)
342108.amb3091PF01814
342108.amb3093(PF00027)
342108.amb0728(PF00015)
342108.amb0723PF01814
342108.amb1923(PF01527)
342108.amb2610(PF13844)
342108.amb3405(PF13426)
342108.amb2041(PF13276)
342108.amb2042(PF01527)
342108.amb3883(PF00027)
342108.amb4296PF01814
342108.amb1806(PF00015)
342108.amb3668(PF13276)
342108.amb3667(PF01527)
342108.amb3665(PF13426)
342108.amb3474(PF00015)
342108.amb0978(PF16916)
342108.amb0974(PF16916)
342108.amb4417PF01814
342108.amb4265PF01814
342108.amb4401PF01814
342108.amb0184(PF00015)
342108.amb0569PF01814
342108.amb3691(PF00027)
342108.amb0985PF01814
342108.amb2806(PF00027)
342108.amb0080(PF03102)
342108.amb4098(PF13426)
342108.amb3265(PF01527)
342108.amb3263(PF13276)
342108.amb3262(PF01527)
342108.amb4415(PF13426)
342108.amb0171(PF16155)
342108.amb3192(PF00015)
342108.amb0793(PF01041)
342108.amb0226PF01814
342108.amb4303(PF00015)
342108.amb0552(PF00015)
342108.amb1918(PF13426)
342108.amb0885(PF16916)
342108.amb2324(PF00027)
342108.amb1112(PF13426)
342108.amb1549PF01814
342108.amb0092(PF03102)
342108.amb4428(PF01527)
342108.amb4429(PF13276)
342108.amb4422(PF09731)
342108.amb3329(PF13426)
342108.amb1965(PF00015)
342108.amb2841(PF13844)
342108.amb3539(PF00015)
342108.amb2954(PF13426)
342108.amb4259(PF00027)
342108.amb1378PF01814
342108.amb1556(PF00015)
342108.amb1558(PF00027)
342108.amb2795(PF00015)
342108.amb2551(PF00027)
342108.amb1971(PF13426)
342108.amb3152(PF01527)
342108.amb2770(PF00015)
342108.amb3833(PF00027)
342108.amb3835PF01814
342108.amb0935PF01814
342108.amb2946(PF00027)
342108.amb4136PF01814
342108.amb1415PF01814
342108.amb2789(PF00216)
342108.amb3554(PF00015)
342108.amb3821(PF00015)
342108.amb3792(PF13844)
342108.amb0923(PF00216)
342108.amb2977(PF00027)
342108.amb2994(PF00015)
342108.amb1535(PF13426)
342108.amb3316(PF01527)
342108.amb3314(PF00015)
342108.amb1621PF01814
342108.amb0045(PF01041)
342108.amb3001(PF00015)
342108.amb1952PF01814
342108.amb1959(PF00015)
342108.amb3810(PF13844)
342108.amb0914(PF01527)
342108.amb0911(PF01527)
342108.amb3966PF01814
342108.amb2980(PF13426)
342108.amb0127(PF01041)
342108.amb0054(PF01041)
342108.amb0052(PF01041)
342108.amb0679(PF00027)
342108.amb3102(PF00015)
342108.amb2181(PF00216)
342108.amb3616(PF13426)
342108.amb3617(PF13426)
342108.amb3610PF01814
342108.amb3574PF01814
342108.amb3808(PF01041)
342108.amb2355(PF00216)
342108.amb2357(PF13844)
342108.amb0871PF01814
342108.amb0111(PF01041)
342108.amb4369(PF00027)
342108.amb1045(PF13276)
342108.amb1046(PF01527)
342108.amb0649(PF01527)
342108.amb0640(PF01527)
342108.amb0641(PF13276)
342108.amb2517(PF00015)
342108.amb0646(PF01527)
342108.amb2736(PF13426)
342108.amb2239PF01814
342108.amb2237(PF00027)
342108.amb0109(PF05421)
342108.amb4171PF01814
342108.amb0078(PF01041)
342108.amb0075(PF01041)
342108.amb1072(PF01041)
342108.amb2504(PF13844)
342108.amb0493(PF00027)
342108.amb1857(PF00027)
342108.amb3631(PF00015)
342108.amb3756(PF13276)
342108.amb3755(PF01527)
342108.amb2654PF01814
342108.amb2248(PF13426)
342108.amb2249PF01814
342108.amb2243(PF03016)
342108.amb2241(PF00015)
342108.amb4494(PF13426)
342108.amb4164(PF00015)
342108.amb1281(PF13426)
342108.amb3351(PF00027)
342108.amb3356(PF00027)
342108.amb4019(PF13431)
342108.amb2535PF01814
342108.amb3280(PF01527)
342108.amb0717(PF01041)
342108.amb0713(PF03102)
342108.amb1841(PF13426)
342108.amb3720(PF00015)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================