Effective results for Salinispora tropica CNB-440 (eggnog40)

Summary

Number of putative secreted proteins: 51
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 16 eukaryotic-like domains, contained in 51 proteins (1 high, 50 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
369723.Strop_0208				(PF05977)	(ER); (plastid)
369723.Strop_0204				(PF00891)	ER
369723.Strop_0418				(PF05977)	mitochondrial
369723.Strop_2303				(PF05977)	mitochondrial; (mitochondrial)
369723.Strop_4415				(PF05977)	(ER)
369723.Strop_2001				(PF00686)	mitochondrial
369723.Strop_2565				(PF01066)	ER
369723.Strop_2815				(PF00891)	mitochondrial; (mitochondrial)
369723.Strop_1585				(PF00415)	mitochondrial; (mitochondrial)
369723.Strop_1397				(PF01066)	(mitochondrial)
369723.Strop_3896				(PF00163)	(mitochondrial)
369723.Strop_4023				(PF05977)	ER; (ER)
369723.Strop_2409				(PF05977)	(mitochondrial)
369723.Strop_4230				(PF01066)	mitochondrial; (mitochondrial)
369723.Strop_1190				(PF03644)	ER
369723.Strop_0347				(PF05977)	mitochondrial
369723.Strop_2052				(PF16387)	ER
369723.Strop_1179				(PF00415)	(ER)
369723.Strop_1786				(PF01066)	(mitochondrial)
369723.Strop_2483				(PF05977)	(ER)
369723.Strop_3249				(PF01066)	(mitochondrial)
369723.Strop_3829				(PF01066)	(mitochondrial)
369723.Strop_1979				(PF00415)	(mitochondrial)
369723.Strop_1176				(PF00415)	(mitochondrial)
369723.Strop_2214				(PF00891)
369723.Strop_3144				(PF11338)
369723.Strop_2157				(PF11338)
369723.Strop_2943				(PF12740)
369723.Strop_0520				(PF02945)
369723.Strop_4414				(PF00891)
369723.Strop_2969				(PF12740)
369723.Strop_0433				(PF01066)
369723.Strop_0425				(PF05977)
369723.Strop_2349				(PF00415)
369723.Strop_4565				(PF00415)
369723.Strop_4165				(PF05977)
369723.Strop_2928				(PF01066)
369723.Strop_1441				(PF01847)
369723.Strop_0656				(PF05977)
369723.Strop_2387				(PF01066)
369723.Strop_0483				(PF00648)
369723.Strop_4489				(PF01066)
369723.Strop_2830				(PF00891)
369723.Strop_2072				(PF05977)
369723.Strop_1193				(PF00415)
369723.Strop_2064				(PF00755)
369723.Strop_0344				PF08213	not used
369723.Strop_0831				(PF01789)
369723.Strop_2195				(PF00891)
369723.Strop_2686				(PF00686)
369723.Strop_4369				(PF00163)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================