Effective results for Halothermothrix orenii H 168 (eggnog40)

Summary

Number of putative secreted proteins: 42
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 23 eukaryotic-like domains, contained in 42 proteins (6 high, 36 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
373903.Hore_15940				(PF01094)	ER
373903.Hore_02490				(PF01871)	(mitochondrial)
373903.Hore_18730				(PF09154)	ER
373903.Hore_05360				PF12349	(ER)
373903.Hore_18240				(PF09154)	ER
373903.Hore_01535				(PF01871)	(mitochondrial)
373903.Hore_20540				(PF12862)	(mitochondrial)
373903.Hore_01810				(PF01257) (PF02906) (PF02256)
373903.Hore_06330				(PF02906) (PF02256)
373903.Hore_03490				(PF02732)	(mitochondrial)
373903.Hore_04170				(PF06165) (PF17167)
373903.Hore_02980				(PF02906) (PF02256)
373903.Hore_19760				(PF06165) (PF17167)
373903.Hore_15430				(PF05034) (PF07476)
373903.Hore_19750				(PF06165) (PF17167)
373903.Hore_05910				(PF02421)
373903.Hore_06320				(PF01257)
373903.Hore_05070				(PF02421)
373903.Hore_02950				(PF02906)
373903.Hore_01770				(PF02906)
373903.Hore_01790				(PF01257)
373903.Hore_06310				(PF01257)
373903.Hore_19410				(PF01991)
373903.Hore_13350				(PF02421)
373903.Hore_00200				PF10494
373903.Hore_16020				(PF16760)
373903.Hore_02960				(PF01257)
373903.Hore_01520				PF00380
373903.Hore_17470				(PF03652)
373903.Hore_15410				(PF14330)
373903.Hore_01510				PF00572
373903.Hore_05800				(PF03652)
373903.Hore_18210				(PF00862)
373903.Hore_02460				PF00572
373903.Hore_02080				(PF01257)
373903.Hore_19950				(PF03266)
373903.Hore_02060				(PF02906)
373903.Hore_01800				(PF01257)
373903.Hore_02470				PF00380
373903.Hore_02090				(PF02906)
373903.Hore_02710				(PF02421)
373903.Hore_02870				(PF02906)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================