Effective results for Teredinibacter turnerae T7901 (eggnog40)

Summary

Number of putative secreted proteins: 87
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 28 eukaryotic-like domains, contained in 87 proteins (14 high, 73 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
377629.TERTU_3387				(PF03422) (PF00553)	ER
377629.TERTU_4019				(PF00759) (PF00553)	ER
377629.TERTU_4225				(PF00553) (PF03664)	(ER); ER
377629.TERTU_2894				(PF00150) (PF00553)	mitochondrial
377629.TERTU_0645				(PF00759) (PF00553)	mitochondrial
377629.TERTU_2321				(PF03422) (PF00553)	mitochondrial
377629.TERTU_2684				(PF03422) (PF00553)	ER
377629.TERTU_2546				(PF00331) (PF00553)	(mitochondrial); plastid
377629.TERTU_2314				(PF03422) (PF00553)	(mitochondrial)
377629.TERTU_4085				(PF00150) (PF03422)	ER
377629.TERTU_3361				(PF00150) (PF00553)	ER
377629.TERTU_3565				(PF00150) (PF00553)	(mitochondrial)
377629.TERTU_1599				(PF00331) (PF03422)	ER
377629.TERTU_0428				(PF00150) PF00457	mitochondrial
377629.TERTU_3400				PF02015 (PF00553)	ER
377629.TERTU_3416				(PF06468)	ER
377629.TERTU_3398				(PF00331)	ER
377629.TERTU_4541				(PF00553)	ER
377629.TERTU_0513				(PF00331)	ER
377629.TERTU_0607				(PF00759)	ER; (ER)
377629.TERTU_0047				(PF00553)	ER
377629.TERTU_2703				(PF00553)	(ER)
377629.TERTU_4242				(PF14295)	ER
377629.TERTU_2893				(PF00759)	ER
377629.TERTU_0835				(PF00331)	mitochondrial
377629.TERTU_3603				(PF00331)	mitochondrial
377629.TERTU_0736				(PF00331)	(mitochondrial)
377629.TERTU_2699				(PF00553)	(ER); ER
377629.TERTU_3102				(PF06468)	ER
377629.TERTU_3101				(PF06468)	ER
377629.TERTU_2211				(PF00553)	ER
377629.TERTU_0031				PF04922	ER
377629.TERTU_4303				(PF16403)	ER
377629.TERTU_3487				(PF03662)	mitochondrial
377629.TERTU_4312				(PF16403)	ER; (ER)
377629.TERTU_0767				PF02015	ER
377629.TERTU_0782				(PF00759)	ER
377629.TERTU_4676				(PF00331)	ER
377629.TERTU_4415				(PF00150)	ER
377629.TERTU_0775				(PF07678)	ER
377629.TERTU_3803				(PF00553)	(mitochondrial)
377629.TERTU_2311				(PF00553)	ER
377629.TERTU_3450				PF16184	ER
377629.TERTU_4083				(PF03422)	ER
377629.TERTU_0310				PF16184	(ER)
377629.TERTU_2022				(PF09295)	ER
377629.TERTU_0149				(PF00553)	(ER); (mitochondrial)
377629.TERTU_3775				(PF15071)	ER
377629.TERTU_3356				(PF00553)	mitochondrial; (mitochondrial)
377629.TERTU_4345				(PF00759)	ER
377629.TERTU_4344				(PF00150)	mitochondrial; (mitochondrial)
377629.TERTU_1681				PF00457	ER
377629.TERTU_1680				PF00457	(ER)
377629.TERTU_3514				(PF11721)	ER
377629.TERTU_0155				(PF01419)	ER
377629.TERTU_3690				(PF00150)	ER
377629.TERTU_3347				(PF00553)	mitochondrial
377629.TERTU_3349				(PF00331)	ER
377629.TERTU_0427				(PF00150)	ER
377629.TERTU_2343				PF12349	mitochondrial; (mitochondrial)
377629.TERTU_3987				(PF00553)	ER
377629.TERTU_3505				PF16184	(ER)
377629.TERTU_3751				(PF00150)	ER
377629.TERTU_0183				(PF00150)	ER
377629.TERTU_1485				(PF03422)	ER
377629.TERTU_1678				PF00457	(ER)
377629.TERTU_4238				(PF03664)	(mitochondrial)
377629.TERTU_3447				(PF11721) PF00457
377629.TERTU_2895				(PF00150)	plastid
377629.TERTU_2320				(PF03422) (PF00553)
377629.TERTU_4311				(PF16403)	(ER)
377629.TERTU_2762				(PF06165) (PF17167)
377629.TERTU_2767				(PF06165) (PF17167)
377629.TERTU_0851				(PF06165) (PF17167)
377629.TERTU_1675				(PF03422)	(ER)
377629.TERTU_2280				PF01644
377629.TERTU_0317				(PF01764)
377629.TERTU_0817				(PF00331)
377629.TERTU_2687				(PF01764)
377629.TERTU_4529				(PF01947)
377629.TERTU_2560				(PF05189)
377629.TERTU_1683				(PF01764)
377629.TERTU_0331				(PF00553)
377629.TERTU_1202				(PF12038)
377629.TERTU_0852				PF04922
377629.TERTU_2611				(PF13875)
377629.TERTU_1674				(PF03422)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: YES (FDR = 7.7 %)
  Estimated copy number = 2.0 (16/8 KEGG proteins)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================