Effective results for Sulfurovum sp. NBC37-1 (eggnog40)

Summary

Number of putative secreted proteins: 38
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 18 eukaryotic-like domains, contained in 38 proteins (4 high, 34 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
387093.SUN_0884				(PF06500)	ER
387093.SUN_0885				(PF06500)	ER
387093.SUN_0505				(PF03190)	ER
387093.SUN_0504				(PF03190)	ER
387093.SUN_0054				(PF13899)	ER
387093.SUN_1908				(PF00431)	ER
387093.SUN_0060				(PF13899)	ER
387093.SUN_0490				(PF13899)	ER
387093.SUN_0652				(PF03190)	ER
387093.SUN_0733				PF11074	(mitochondrial)
387093.SUN_0057				(PF03625)	ER
387093.SUN_0250				(PF13899)	ER
387093.SUN_1035				(PF13899)	ER
387093.SUN_0647				(PF03625)	ER
387093.SUN_0915				(PF05970)	(mitochondrial)
387093.SUN_0045				(PF03625)	ER
387093.SUN_1328				(PF13899)	ER
387093.SUN_1852				(PF13899)	ER
387093.SUN_0982				(PF05970) (PF02689)
387093.SUN_0103				(PF02516)	(ER)
387093.SUN_1766				(PF01875)	(mitochondrial)
387093.SUN_1263				(PF01142)
387093.SUN_0507				(PF03625)
387093.SUN_0994				(PF14792)
387093.SUN_2349				(PF02943)
387093.SUN_2298				PF11074
387093.SUN_1812				PF02807
387093.SUN_2133				PF05203
387093.SUN_0382				(PF02943)
387093.SUN_1028				(PF12513)
387093.SUN_0115				(PF03190)
387093.SUN_1193				(PF01142)
387093.SUN_0692				(PF13899)
387093.SUN_0541				(PF16114)
387093.SUN_0799				(PF03625)
387093.SUN_0977				(PF01875)
387093.SUN_2011				(PF07787)
387093.SUN_1859				(PF03190)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================