Effective results for Sagittula stellata E-37 (eggnog40)

Summary

Number of putative secreted proteins: 94
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 26 eukaryotic-like domains, contained in 94 proteins (5 high, 89 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
388399.SSE37_16578(PF13279)mitochondrial
388399.SSE37_00505(PF03480)ER
388399.SSE37_04195(PF03480)ER
388399.SSE37_18417PF10712ER
388399.SSE37_07183(PF03480)ER
388399.SSE37_09723(PF01970)(ER)
388399.SSE37_02585(PF03480)(ER)
388399.SSE37_03965(PF03480)mitochondrial
388399.SSE37_20712(PF03480)ER
388399.SSE37_09893(PF01970)ER
388399.SSE37_11209PF12142mitochondrial; (mitochondrial)
388399.SSE37_09393(PF03480)ER; (ER)
388399.SSE37_08373(PF01970)ER
388399.SSE37_20802(PF03480)(mitochondrial)
388399.SSE37_17695(PF01847)ER
388399.SSE37_01420(PF03480)ER
388399.SSE37_14754(PF03480)ER
388399.SSE37_05892(PF01970)ER
388399.SSE37_21390(PF03480)(mitochondrial)
388399.SSE37_09693(PF03480)ER
388399.SSE37_12596(PF03480)ER
388399.SSE37_20742(PF01970)ER
388399.SSE37_02400(PF03480)(mitochondrial)
388399.SSE37_01035(PF03480)ER
388399.SSE37_18937(PF03480)ER
388399.SSE37_00255(PF03480)mitochondrial; (mitochondrial)
388399.SSE37_08868(PF13778)ER
388399.SSE37_01020(PF03480)ER
388399.SSE37_00640(PF14532)(mitochondrial)
388399.SSE37_12656(PF01970)(ER)
388399.SSE37_10323(PF01970)ER
388399.SSE37_05410(PF03480)mitochondrial; (mitochondrial)
388399.SSE37_07633(PF13704)ER
388399.SSE37_02350(PF01970)ER
388399.SSE37_18372(PF13704)mitochondrial
388399.SSE37_01280(PF03437)(plastid)
388399.SSE37_20692(PF01970)(ER)
388399.SSE37_13493(PF03480)(plastid)
388399.SSE37_24604(PF03480)(plastid)
388399.SSE37_00960(PF01070)(mitochondrial)
388399.SSE37_10889(PF03480)(mitochondrial)
388399.SSE37_02735(PF03480)(ER)
388399.SSE37_19757(PF05704)(mitochondrial)
388399.SSE37_23329(PF03480)(mitochondrial)
388399.SSE37_18367(PF02485)(plastid)
388399.SSE37_10033(PF01070)(mitochondrial)
388399.SSE37_10028(PF07700)(ER)
388399.SSE37_06684(PF14532)
388399.SSE37_12876(PF07700)
388399.SSE37_24499(PF03480)
388399.SSE37_01265(PF03437)
388399.SSE37_12059(PF13279)
388399.SSE37_25028(PF10013)not used
388399.SSE37_08528(PF13279)
388399.SSE37_24379(PF03480)
388399.SSE37_19442(PF13778)
388399.SSE37_04190(PF14532)
388399.SSE37_01130(PF01070)
388399.SSE37_03365(PF10609)not used
388399.SSE37_17845(PF09731)
388399.SSE37_10303(PF06792)
388399.SSE37_20732(PF01070)
388399.SSE37_02620(PF08856)
388399.SSE37_07653(PF13704)
388399.SSE37_02445(PF13279)
388399.SSE37_04415(PF13704)
388399.SSE37_01895(PF08856)
388399.SSE37_19867(PF09458)
388399.SSE37_07643(PF13704)
388399.SSE37_06284(PF13704)
388399.SSE37_05255(PF13279)
388399.SSE37_13353(PF13279)
388399.SSE37_24444(PF13279)
388399.SSE37_00160(PF13279)
388399.SSE37_01400(PF03480)
388399.SSE37_14288(PF01970)
388399.SSE37_05270(PF13704)
388399.SSE37_12916(PF00036)
388399.SSE37_18240(PF02485)
388399.SSE37_10442(PF01070)
388399.SSE37_24089(PF10609)
388399.SSE37_21585(PF06792)
388399.SSE37_06774PF10563
388399.SSE37_07648(PF02475)
388399.SSE37_14954(PF03480)
388399.SSE37_00315(PF01970)
388399.SSE37_12731(PF10609)
388399.SSE37_09018(PF01070)
388399.SSE37_06094PF00627
388399.SSE37_03890(PF13704)
388399.SSE37_11349(PF13704)
388399.SSE37_04940(PF16095)
388399.SSE37_03885(PF13704)
388399.SSE37_03410PF07065

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 1.375 (11/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================