Effective results for Sagittula stellata E-37 (eggnog40)
Summary
Number of putative secreted proteins: 94
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 26 eukaryotic-like domains, contained in 94 proteins (5 high, 89 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type VI
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
---|---|---|---|---|---|
388399.SSE37_16578 | (PF13279) | mitochondrial | |||
388399.SSE37_00505 | (PF03480) | ER | |||
388399.SSE37_04195 | (PF03480) | ER | |||
388399.SSE37_18417 | PF10712 | ER | |||
388399.SSE37_07183 | (PF03480) | ER | |||
388399.SSE37_09723 | (PF01970) | (ER) | |||
388399.SSE37_02585 | (PF03480) | (ER) | |||
388399.SSE37_03965 | (PF03480) | mitochondrial | |||
388399.SSE37_20712 | (PF03480) | ER | |||
388399.SSE37_09893 | (PF01970) | ER | |||
388399.SSE37_11209 | PF12142 | mitochondrial; (mitochondrial) | |||
388399.SSE37_09393 | (PF03480) | ER; (ER) | |||
388399.SSE37_08373 | (PF01970) | ER | |||
388399.SSE37_20802 | (PF03480) | (mitochondrial) | |||
388399.SSE37_17695 | (PF01847) | ER | |||
388399.SSE37_01420 | (PF03480) | ER | |||
388399.SSE37_14754 | (PF03480) | ER | |||
388399.SSE37_05892 | (PF01970) | ER | |||
388399.SSE37_21390 | (PF03480) | (mitochondrial) | |||
388399.SSE37_09693 | (PF03480) | ER | |||
388399.SSE37_12596 | (PF03480) | ER | |||
388399.SSE37_20742 | (PF01970) | ER | |||
388399.SSE37_02400 | (PF03480) | (mitochondrial) | |||
388399.SSE37_01035 | (PF03480) | ER | |||
388399.SSE37_18937 | (PF03480) | ER | |||
388399.SSE37_00255 | (PF03480) | mitochondrial; (mitochondrial) | |||
388399.SSE37_08868 | (PF13778) | ER | |||
388399.SSE37_01020 | (PF03480) | ER | |||
388399.SSE37_00640 | (PF14532) | (mitochondrial) | |||
388399.SSE37_12656 | (PF01970) | (ER) | |||
388399.SSE37_10323 | (PF01970) | ER | |||
388399.SSE37_05410 | (PF03480) | mitochondrial; (mitochondrial) | |||
388399.SSE37_07633 | (PF13704) | ER | |||
388399.SSE37_02350 | (PF01970) | ER | |||
388399.SSE37_18372 | (PF13704) | mitochondrial | |||
388399.SSE37_01280 | (PF03437) | (plastid) | |||
388399.SSE37_20692 | (PF01970) | (ER) | |||
388399.SSE37_13493 | (PF03480) | (plastid) | |||
388399.SSE37_24604 | (PF03480) | (plastid) | |||
388399.SSE37_00960 | (PF01070) | (mitochondrial) | |||
388399.SSE37_10889 | (PF03480) | (mitochondrial) | |||
388399.SSE37_02735 | (PF03480) | (ER) | |||
388399.SSE37_19757 | (PF05704) | (mitochondrial) | |||
388399.SSE37_23329 | (PF03480) | (mitochondrial) | |||
388399.SSE37_18367 | (PF02485) | (plastid) | |||
388399.SSE37_10033 | (PF01070) | (mitochondrial) | |||
388399.SSE37_10028 | (PF07700) | (ER) | |||
388399.SSE37_06684 | (PF14532) | ||||
388399.SSE37_12876 | (PF07700) | ||||
388399.SSE37_24499 | (PF03480) | ||||
388399.SSE37_01265 | (PF03437) | ||||
388399.SSE37_12059 | (PF13279) | ||||
388399.SSE37_25028 | (PF10013) | not used | |||
388399.SSE37_08528 | (PF13279) | ||||
388399.SSE37_24379 | (PF03480) | ||||
388399.SSE37_19442 | (PF13778) | ||||
388399.SSE37_04190 | (PF14532) | ||||
388399.SSE37_01130 | (PF01070) | ||||
388399.SSE37_03365 | (PF10609) | not used | |||
388399.SSE37_17845 | (PF09731) | ||||
388399.SSE37_10303 | (PF06792) | ||||
388399.SSE37_20732 | (PF01070) | ||||
388399.SSE37_02620 | (PF08856) | ||||
388399.SSE37_07653 | (PF13704) | ||||
388399.SSE37_02445 | (PF13279) | ||||
388399.SSE37_04415 | (PF13704) | ||||
388399.SSE37_01895 | (PF08856) | ||||
388399.SSE37_19867 | (PF09458) | ||||
388399.SSE37_07643 | (PF13704) | ||||
388399.SSE37_06284 | (PF13704) | ||||
388399.SSE37_05255 | (PF13279) | ||||
388399.SSE37_13353 | (PF13279) | ||||
388399.SSE37_24444 | (PF13279) | ||||
388399.SSE37_00160 | (PF13279) | ||||
388399.SSE37_01400 | (PF03480) | ||||
388399.SSE37_14288 | (PF01970) | ||||
388399.SSE37_05270 | (PF13704) | ||||
388399.SSE37_12916 | (PF00036) | ||||
388399.SSE37_18240 | (PF02485) | ||||
388399.SSE37_10442 | (PF01070) | ||||
388399.SSE37_24089 | (PF10609) | ||||
388399.SSE37_21585 | (PF06792) | ||||
388399.SSE37_06774 | PF10563 | ||||
388399.SSE37_07648 | (PF02475) | ||||
388399.SSE37_14954 | (PF03480) | ||||
388399.SSE37_00315 | (PF01970) | ||||
388399.SSE37_12731 | (PF10609) | ||||
388399.SSE37_09018 | (PF01070) | ||||
388399.SSE37_06094 | PF00627 | ||||
388399.SSE37_03890 | (PF13704) | ||||
388399.SSE37_11349 | (PF13704) | ||||
388399.SSE37_04940 | (PF16095) | ||||
388399.SSE37_03885 | (PF13704) | ||||
388399.SSE37_03410 | PF07065 |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: NO (FDR = 12.5 %)
- Functional Type IV secretion system: NO (FDR = 7.2 %)
- Functional Type VI secretion system: YES (FDR = 7.7 %)
Estimated copy number = 1.375 (11/8 KEGG proteins)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
Estimated copy number = 1.375 (11/8 KEGG proteins)