Effective results for Rhodobacteraceae bacterium HTCC2150 (eggnog40)

Summary

Number of putative secreted proteins: 87
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 23 eukaryotic-like domains, contained in 87 proteins (15 high, 72 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
388401.RB2150_12481(PF13704)mitochondrial
388401.RB2150_10104PF04750ER; (ER)
388401.RB2150_06173(PF14240)ER
388401.RB2150_05908(PF00665)(mitochondrial)
388401.RB2150_15151(PF03567)(mitochondrial)
388401.RB2150_00380(PF16350)ER
388401.RB2150_05658(PF08570)ER; (ER)
388401.RB2150_02574(PF11911)ER
388401.RB2150_11196(PF14240)ER
388401.RB2150_09479(PF11911)ER
388401.RB2150_12046(PF08570)ER
388401.RB2150_12486(PF02485)plastid
388401.RB2150_05858(PF14330)(mitochondrial)
388401.RB2150_02104PF13565 (PF00665)
388401.RB2150_02584PF13565 (PF00665)
388401.RB2150_05918PF13565 (PF00665)
388401.RB2150_00280PF13565 (PF00665)
388401.RB2150_11386PF13565 (PF00665)
388401.RB2150_15880(PF03567)(plastid)
388401.RB2150_00245PF13565 (PF00665)
388401.RB2150_14281(PF01321)(mitochondrial)
388401.RB2150_06488(PF16350)(ER)
388401.RB2150_00215PF13565 (PF00665)
388401.RB2150_09474PF13565 (PF00665)
388401.RB2150_17274PF13565 (PF00665)
388401.RB2150_00095PF13565 (PF00665)
388401.RB2150_02804PF13565 (PF00665)
388401.RB2150_09259PF13565 (PF00665)
388401.RB2150_17299PF13565 (PF00665)
388401.RB2150_08638(PF14248)
388401.RB2150_05118(PF16350)
388401.RB2150_11121(PF01755)
388401.RB2150_14886(PF09458)
388401.RB2150_17777(PF00665)
388401.RB2150_06003(PF00665)
388401.RB2150_10711(PF11927)not used
388401.RB2150_14011(PF03567)
388401.RB2150_04443(PF01321)
388401.RB2150_00170(PF01847)
388401.RB2150_02289(PF16350)
388401.RB2150_03384(PF09994)
388401.RB2150_17579(PF00665)
388401.RB2150_09779(PF10013)not used
388401.RB2150_02129(PF00665)
388401.RB2150_02549(PF03567)
388401.RB2150_00015(PF14248)
388401.RB2150_08018(PF03567)
388401.RB2150_00155(PF00665)
388401.RB2150_02554(PF13704)
388401.RB2150_06633(PF05706)
388401.RB2150_14356(PF01321)
388401.RB2150_16042PF13565
388401.RB2150_08393(PF08975)
388401.RB2150_00125(PF00665)
388401.RB2150_01534(PF13704)
388401.RB2150_07673(PF16350)
388401.RB2150_00140(PF00665)
388401.RB2150_17599(PF00665)
388401.RB2150_01189(PF13704)
388401.RB2150_07938(PF03567)
388401.RB2150_14816(PF09994)
388401.RB2150_16934(PF01321)
388401.RB2150_18377(PF00665)
388401.RB2150_09884(PF00665)
388401.RB2150_14651(PF13704)
388401.RB2150_16252(PF01755)
388401.RB2150_18367(PF09458)
388401.RB2150_13156(PF01321)
388401.RB2150_13796(PF01755)
388401.RB2150_17862(PF01321)
388401.RB2150_04598(PF09994)
388401.RB2150_14016(PF02485)
388401.RB2150_11941(PF09585)
388401.RB2150_11946(PF09585)
388401.RB2150_08428(PF00665)
388401.RB2150_17469(PF12973)
388401.RB2150_09799(PF12973)
388401.RB2150_03678(PF01321)
388401.RB2150_03928(PF01321)
388401.RB2150_05948(PF00665)
388401.RB2150_04433(PF11927)
388401.RB2150_06028(PF00665)
388401.RB2150_00345(PF03567)
388401.RB2150_06158(PF12973)
388401.RB2150_11111(PF01755)
388401.RB2150_09914(PF12973)
388401.RB2150_07683(PF16350)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================