Metamenu

Effective results for Salinispora arenicola CNS-205 (eggnog40)

Summary

Number of putative secreted proteins: 119
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 36 eukaryotic-like domains, contained in 119 proteins (21 high, 98 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
391037.Sare_0232(PF00891) (PF16864)ER
391037.Sare_1604PF03318mitochondrial
391037.Sare_3041(PF13359)mitochondrial; plastid
391037.Sare_4404(PF02223)ER; (ER)
391037.Sare_1263(PF04101)ER
391037.Sare_0529(PF13529)(ER)
391037.Sare_0016PF00415mitochondrial
391037.Sare_1253(PF01761)(mitochondrial)
391037.Sare_0647(PF13529)mitochondrial
391037.Sare_2029(PF14765)(ER)
391037.Sare_2082(PF00891)(ER); (plastid)
391037.Sare_1070PF00415(mitochondrial)
391037.Sare_2129(PF13653)ER
391037.Sare_1998(PF13359)mitochondrial; plastid
391037.Sare_3808(PF13529)mitochondrial
391037.Sare_1538PF00415(mitochondrial)
391037.Sare_1539PF00415(mitochondrial)
391037.Sare_0278(PF04101)mitochondrial; (mitochondrial)
391037.Sare_4379PF03318ER
391037.Sare_3961(PF02223)(ER); (mitochondrial)
391037.Sare_2500(PF03984)ER
391037.Sare_3105(PF13359)mitochondrial; plastid
391037.Sare_2979(PF02796)ER
391037.Sare_1083(PF03644)ER
391037.Sare_4287(PF00163)(mitochondrial)
391037.Sare_2196(PF05185)mitochondrial; (mitochondrial)
391037.Sare_4382PF00415mitochondrial
391037.Sare_4380PF00415mitochondrial
391037.Sare_4652PF00415(mitochondrial)
391037.Sare_2170(PF00891)(ER)
391037.Sare_0368(PF13415)mitochondrial
391037.Sare_2494PF00415mitochondrial
391037.Sare_0177(PF04101)(mitochondrial)
391037.Sare_1591(PF02796)mitochondrial
391037.Sare_2028(PF00891) (PF16864)
391037.Sare_0414PF08213(plastid)
391037.Sare_4888(PF00891) (PF16864)
391037.Sare_2580(PF02796)(mitochondrial)
391037.Sare_0570(PF09334)(mitochondrial)
391037.Sare_4955(PF00891) (PF16864)
391037.Sare_2977PF00415plastid
391037.Sare_1954(PF05711)(ER)
391037.Sare_1957(PF02223)(ER)
391037.Sare_2854(PF02796)mitochondrial
391037.Sare_2567PF00415(mitochondrial)
391037.Sare_3160(PF02796)mitochondrial
391037.Sare_4926(PF02796)mitochondrial
391037.Sare_1715PF00415plastid
391037.Sare_3156(PF14765)(ER)
391037.Sare_1024(PF02796)mitochondrial
391037.Sare_1968(PF02796)mitochondrial
391037.Sare_2489(PF01761)
391037.Sare_1593PF00415
391037.Sare_1287(PF03936)
391037.Sare_3906(PF03301)
391037.Sare_1831(PF04101)
391037.Sare_1246(PF14765)
391037.Sare_1247(PF14765)
391037.Sare_1248(PF14765)
391037.Sare_1249(PF14765)
391037.Sare_2046(PF05711)
391037.Sare_1649(PF13565)
391037.Sare_2208(PF00755)
391037.Sare_3151(PF14765)
391037.Sare_4157(PF04493)
391037.Sare_3439(PF04101)
391037.Sare_0539(PF03301)
391037.Sare_1250(PF14765)
391037.Sare_1840(PF01761)
391037.Sare_2310(PF11338)
391037.Sare_4825(PF11397)
391037.Sare_4951(PF14765)
391037.Sare_4956(PF08491)
391037.Sare_4954(PF09265)
391037.Sare_1677(PF13529)
391037.Sare_1670(PF02036)
391037.Sare_1072PF00415
391037.Sare_4558(PF13359)
391037.Sare_3345(PF04493)
391037.Sare_4818(PF00163)
391037.Sare_4107(PF01259)
391037.Sare_1044(PF09334)
391037.Sare_4565(PF11991)
391037.Sare_2533PF03318
391037.Sare_2407(PF14765)
391037.Sare_3592PF03318
391037.Sare_3576(PF13565)
391037.Sare_3371(PF11338)
391037.Sare_0580(PF10397)
391037.Sare_0582(PF01259)
391037.Sare_1055(PF10397)
391037.Sare_4571(PF13565)
391037.Sare_3107(PF13565)
391037.Sare_2978PF00415
391037.Sare_0578(PF01259)
391037.Sare_1086PF00415
391037.Sare_2199(PF02036)
391037.Sare_3178(PF13565)
391037.Sare_2285(PF13565)
391037.Sare_0143(PF02036)
391037.Sare_3943(PF02036)
391037.Sare_0722(PF09334)
391037.Sare_1899(PF02036)
391037.Sare_0629(PF04101)
391037.Sare_2958(PF10397)
391037.Sare_0154(PF10397)
391037.Sare_4383PF00415
391037.Sare_1398(PF01847)
391037.Sare_2179(PF14765)
391037.Sare_1577(PF02182)
391037.Sare_3153(PF14765)
391037.Sare_3154(PF14765)
391037.Sare_3023(PF13359)
391037.Sare_0540(PF03301)
391037.Sare_2149(PF09334)
391037.Sare_3451(PF09334)
391037.Sare_0558(PF02036)
391037.Sare_0551(PF14765)
391037.Sare_0775(PF01789)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================