Effective results for Eubacterium hallii DSM 3353 (eggnog40)

Summary

Number of putative secreted proteins: 89
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 26 eukaryotic-like domains, contained in 89 proteins (9 high, 80 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
411469.EUBHAL_03196				(PF06541)	ER
411469.EUBHAL_00319				(PF02368)	ER
411469.EUBHAL_00538				(PF01554)	ER
411469.EUBHAL_01467				(PF02368)	ER; (ER)
411469.EUBHAL_03189				(PF05698)	ER
411469.EUBHAL_01171				(PF02368)	(ER)
411469.EUBHAL_02638				(PF09370)	(mitochondrial)
411469.EUBHAL_01106				PF10662	mitochondrial; (mitochondrial)
411469.EUBHAL_01104				(PF06541)	ER
411469.EUBHAL_01075				(PF04607)	(mitochondrial)
411469.EUBHAL_02435				PF13151	(mitochondrial)
411469.EUBHAL_02653				(PF01554)	(ER)
411469.EUBHAL_00265				(PF02368)	ER
411469.EUBHAL_02677				(PF04098)	mitochondrial; (mitochondrial)
411469.EUBHAL_02060				(PF02368)	ER
411469.EUBHAL_03046				(PF01554)	(ER); ER
411469.EUBHAL_02660				(PF02368)	ER; (mitochondrial)
411469.EUBHAL_00930				(PF02368)	(ER); ER
411469.EUBHAL_01407				PF10662	mitochondrial
411469.EUBHAL_00589				(PF02368)	ER
411469.EUBHAL_03023				(PF01554)	ER
411469.EUBHAL_00572				(PF05698)	ER
411469.EUBHAL_01421				PF10662	mitochondrial; (mitochondrial)
411469.EUBHAL_00211				(PF02368)	ER
411469.EUBHAL_02843				PF10662	(mitochondrial)
411469.EUBHAL_01338				PF13151	(ER); ER
411469.EUBHAL_00305				(PF06777)	(mitochondrial)
411469.EUBHAL_02792				(PF02368)	ER
411469.EUBHAL_02172				(PF02368)	ER
411469.EUBHAL_00085				(PF02256) (PF02906)
411469.EUBHAL_00618				(PF02368)	(mitochondrial)
411469.EUBHAL_01088				(PF01554)	(ER)
411469.EUBHAL_03260				PF10662	(mitochondrial)
411469.EUBHAL_01816				(PF06541)	(ER)
411469.EUBHAL_00831				(PF02256) (PF02906)
411469.EUBHAL_03145				(PF02256) (PF02906)
411469.EUBHAL_02027				(PF02256) (PF02906)
411469.EUBHAL_00313				(PF02110)	not used
411469.EUBHAL_01862				(PF01554)
411469.EUBHAL_02768				(PF12646)
411469.EUBHAL_02763				(PF00059)
411469.EUBHAL_02810				(PF02368)	not used
411469.EUBHAL_00320				(PF01668)
411469.EUBHAL_01057				(PF01880)
411469.EUBHAL_00616				(PF02368)
411469.EUBHAL_01876				(PF00882)
411469.EUBHAL_01672				(PF02368)
411469.EUBHAL_02377				(PF01795)
411469.EUBHAL_01065				(PF01554)
411469.EUBHAL_00191				(PF01554)
411469.EUBHAL_01643				(PF04607)
411469.EUBHAL_02347				(PF04607)
411469.EUBHAL_02639				(PF06792)
411469.EUBHAL_03234				(PF02943)
411469.EUBHAL_01653				(PF01554)
411469.EUBHAL_00122				(PF01409)
411469.EUBHAL_00121				(PF01409)
411469.EUBHAL_00655				(PF01554)
411469.EUBHAL_02750				(PF00882)
411469.EUBHAL_01823				(PF02368)
411469.EUBHAL_03152				(PF01880)
411469.EUBHAL_00380				(PF02938)
411469.EUBHAL_02640				(PF09370)
411469.EUBHAL_03289				(PF02906)
411469.EUBHAL_02890				(PF01668)
411469.EUBHAL_01053				(PF01554)
411469.EUBHAL_02663				(PF02110)
411469.EUBHAL_01991				(PF06792)
411469.EUBHAL_01757				(PF07892)
411469.EUBHAL_01573				(PF01554)
411469.EUBHAL_00346				(PF01554)
411469.EUBHAL_00236				(PF02110)	not used
411469.EUBHAL_00564				(PF07892)
411469.EUBHAL_01364				(PF04607)
411469.EUBHAL_01414				(PF02938)
411469.EUBHAL_03024				(PF01795)
411469.EUBHAL_00590				(PF02368)
411469.EUBHAL_02527				(PF16116)
411469.EUBHAL_02526				(PF16116)
411469.EUBHAL_02147				(PF01554)
411469.EUBHAL_00541				PF13151
411469.EUBHAL_00376				(PF04607)
411469.EUBHAL_03224				(PF01554)
411469.EUBHAL_00553				PF13886
411469.EUBHAL_01337				(PF04607)
411469.EUBHAL_01449				(PF01554)
411469.EUBHAL_02949				(PF05698)
411469.EUBHAL_02166				(PF02368)
411469.EUBHAL_00959				(PF01554)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================