Effective results for Methylobacterium sp. 4-46 (eggnog40)
Summary
Number of putative secreted proteins: 391
- Predicted by T4SEpre: 93
- Predicted by EffectiveELD: 50 eukaryotic-like domains, contained in 317 proteins (27 high, 290 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
| Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
|---|---|---|---|---|---|
| 426117.M446_1927 | + | (PF13458) | (mitochondrial) | ||
| 426117.M446_0958 | (PF13276) (PF00665) | mitochondrial; (mitochondrial) | |||
| 426117.M446_1080 | (PF13692) (PF13579) | ER | |||
| 426117.M446_5696 | + | (PF13458) | ER | ||
| 426117.M446_5389 | (PF13692) (PF13579) | mitochondrial | |||
| 426117.M446_2956 | (PF13692) (PF13579) | (mitochondrial) | |||
| 426117.M446_1055 | (PF13276) (PF00665) | mitochondrial | |||
| 426117.M446_3023 | (PF13458) | (ER) | |||
| 426117.M446_4762 | (PF13458) | mitochondrial; (mitochondrial) | |||
| 426117.M446_4765 | (PF12399) | (mitochondrial); (plastid) | |||
| 426117.M446_3254 | (PF10908) | mitochondrial; (mitochondrial) | |||
| 426117.M446_2339 | (PF08447) | ER | |||
| 426117.M446_1336 | (PF13458) | ER | |||
| 426117.M446_2837 | (PF03330) | ER | |||
| 426117.M446_5786 | + | (ER); (plastid) | |||
| 426117.M446_5431 | (PF13458) | ER | |||
| 426117.M446_4202 | + | mitochondrial | |||
| 426117.M446_5158 | + | ER | |||
| 426117.M446_5156 | + | (ER) | |||
| 426117.M446_6545 | (PF05239) | ER | |||
| 426117.M446_0262 | + | ER | |||
| 426117.M446_6489 | (PF13458) | mitochondrial; (mitochondrial) | |||
| 426117.M446_2486 | + | ER | |||
| 426117.M446_0534 | (PF00211) | ER; (ER) | |||
| 426117.M446_2126 | (PF13458) | (ER); (mitochondrial) | |||
| 426117.M446_3989 | (PF13692) | (ER) | |||
| 426117.M446_2143 | (PF01744) | ER | |||
| 426117.M446_0709 | (PF03330) | ER | |||
| 426117.M446_5530 | (PF13458) | ER | |||
| 426117.M446_3372 | (PF00665) | (mitochondrial); plastid | |||
| 426117.M446_4862 | (PF06764) | ER | |||
| 426117.M446_0722 | (PF00211) | ER | |||
| 426117.M446_1079 | (PF05050) | mitochondrial | |||
| 426117.M446_1206 | + | ER | |||
| 426117.M446_3839 | (PF13458) | mitochondrial | |||
| 426117.M446_5573 | (PF13458) | (ER) | |||
| 426117.M446_0910 | (PF00656) | ER | |||
| 426117.M446_2271 | (PF13458) | ER | |||
| 426117.M446_1415 | (PF03073) | ER | |||
| 426117.M446_5220 | + | (mitochondrial) | |||
| 426117.M446_1648 | (PF05239) | ER | |||
| 426117.M446_6338 | (PF13506) | ER | |||
| 426117.M446_3787 | (PF05491) | (mitochondrial) | |||
| 426117.M446_1339 | (PF13458) | mitochondrial; ER | |||
| 426117.M446_6414 | (PF13276) (PF00665) | (mitochondrial) | |||
| 426117.M446_6815 | (PF00211) | mitochondrial | |||
| 426117.M446_3520 | (PF13458) | ER | |||
| 426117.M446_3723 | (PF03209) | mitochondrial | |||
| 426117.M446_0292 | (PF01799) | mitochondrial; plastid | |||
| 426117.M446_0290 | (PF00656) | ER | |||
| 426117.M446_4197 | + | (mitochondrial) | |||
| 426117.M446_2734 | (PF11911) | (ER); ER | |||
| 426117.M446_3466 | (PF08447) | ER | |||
| 426117.M446_3891 | (PF13458) | ER | |||
| 426117.M446_6425 | (PF00211) | ER | |||
| 426117.M446_1126 | + | mitochondrial; (mitochondrial) | |||
| 426117.M446_0373 | (PF04654) | ER | |||
| 426117.M446_4272 | (PF02245) | (mitochondrial) | |||
| 426117.M446_4277 | (PF09361) | (mitochondrial) | |||
| 426117.M446_2530 | (PF13458) | ER | |||
| 426117.M446_2949 | (PF13458) | ER | |||
| 426117.M446_6400 | (PF03330) | (mitochondrial) | |||
| 426117.M446_2080 | (PF10908) | ER; (ER) | |||
| 426117.M446_3169 | (PF13458) | ER | |||
| 426117.M446_6408 | (PF13276) (PF00665) | mitochondrial | |||
| 426117.M446_6250 | (PF13458) | ER | |||
| 426117.M446_3613 | (PF00211) | ER | |||
| 426117.M446_3340 | + | mitochondrial; (mitochondrial) | |||
| 426117.M446_0580 | + | ER | |||
| 426117.M446_4759 | (PF13458) | ER | |||
| 426117.M446_6276 | (PF03330) | (ER) | |||
| 426117.M446_3244 | (PF13458) | ER | |||
| 426117.M446_3030 | (PF08447) | (mitochondrial) | |||
| 426117.M446_1303 | (PF01799) | mitochondrial; (mitochondrial) | |||
| 426117.M446_5798 | + | ER | |||
| 426117.M446_3095 | (PF11911) | ER | |||
| 426117.M446_3724 | (PF05239) | (ER) | |||
| 426117.M446_1930 | (PF12399) | (mitochondrial) | |||
| 426117.M446_2305 | (PF13458) | ER | |||
| 426117.M446_0097 | (PF11991) | (mitochondrial) | |||
| 426117.M446_4795 | (PF08795) | (mitochondrial) | |||
| 426117.M446_0527 | (PF00211) | ER; (ER) | |||
| 426117.M446_4691 | (PF08447) | mitochondrial | |||
| 426117.M446_1976 | (PF13458) | (mitochondrial) | |||
| 426117.M446_0757 | (PF13458) | mitochondrial; (mitochondrial) | |||
| 426117.M446_0509 | (PF08975) | (mitochondrial) | |||
| 426117.M446_2285 | (PF13579) | (mitochondrial) | |||
| 426117.M446_1954 | + | ER; plastid | |||
| 426117.M446_5718 | (PF05239) | ER | |||
| 426117.M446_0920 | (PF00656) | ER | |||
| 426117.M446_0549 | (PF13458) | (mitochondrial) | |||
| 426117.M446_0540 | (PF00656) | ER | |||
| 426117.M446_1412 | (PF13632) | ER | |||
| 426117.M446_0483 | (PF07250) | mitochondrial | |||
| 426117.M446_6884 | PF13551 | (mitochondrial) | |||
| 426117.M446_3610 | + | mitochondrial; plastid | |||
| 426117.M446_1617 | (PF00656) | ER | |||
| 426117.M446_5759 | + | ER | |||
| 426117.M446_2196 | + | (mitochondrial); (plastid) | |||
| 426117.M446_0134 | + | ER | |||
| 426117.M446_0139 | + | ER | |||
| 426117.M446_4698 | (PF13458) | ER | |||
| 426117.M446_3321 | (PF08447) | mitochondrial; (mitochondrial) | |||
| 426117.M446_1677 | (PF08447) | (mitochondrial) | |||
| 426117.M446_3640 | (PF12399) | mitochondrial | |||
| 426117.M446_3643 | (PF13458) | ER | |||
| 426117.M446_1798 | (PF13458) | ER | |||
| 426117.M446_1790 | (PF13458) | ER | |||
| 426117.M446_1421 | (PF13458) | ER | |||
| 426117.M446_5935 | + | ER | |||
| 426117.M446_3994 | + | (mitochondrial); mitochondrial | |||
| 426117.M446_6606 | (PF13506) | ER | |||
| 426117.M446_2075 | (PF13692) | mitochondrial; (mitochondrial) | |||
| 426117.M446_3679 | + | ER | |||
| 426117.M446_0326 | (PF13458) | ER | |||
| 426117.M446_4536 | + | ER | |||
| 426117.M446_5055 | (PF06764) | ER | |||
| 426117.M446_1515 | PF13551 | (mitochondrial) | |||
| 426117.M446_5642 | (PF13458) | mitochondrial | |||
| 426117.M446_5649 | (PF05239) | ER | |||
| 426117.M446_3558 | (PF08447) | (ER) | |||
| 426117.M446_5073 | (PF13458) | (ER); (mitochondrial) | |||
| 426117.M446_1485 | + | (mitochondrial) | |||
| 426117.M446_4287 | (PF13276) (PF00665) | mitochondrial | |||
| 426117.M446_6439 | (PF00211) | mitochondrial; (mitochondrial) | |||
| 426117.M446_3713 | (PF03209) | ER; (ER) | |||
| 426117.M446_3711 | (PF03073) | ER | |||
| 426117.M446_0002 | + | (mitochondrial) | |||
| 426117.M446_5013 | (PF13458) | ER | |||
| 426117.M446_2091 | + | ER | |||
| 426117.M446_4924 | (PF03330) | ER | |||
| 426117.M446_0029 | (PF00656) | ER | |||
| 426117.M446_0023 | (PF13458) | mitochondrial | |||
| 426117.M446_5030 | (PF00656) | ER | |||
| 426117.M446_5032 | (PF00656) | ER | |||
| 426117.M446_1054 | (PF13518) | (plastid) | |||
| 426117.M446_4011 | PF13936 (PF00665) | ||||
| 426117.M446_3000 | (PF08447) | (mitochondrial) | |||
| 426117.M446_2317 | + | (plastid) | |||
| 426117.M446_0268 | (PF08447) | (mitochondrial) | |||
| 426117.M446_2817 | (PF00211) | (ER) | |||
| 426117.M446_2489 | (PF08447) | (ER) | |||
| 426117.M446_2293 | (PF00211) | (plastid) | |||
| 426117.M446_2297 | + | (ER) | |||
| 426117.M446_0188 | (PF13276) (PF00665) | ||||
| 426117.M446_6916 | PF13551 (PF00665) | ||||
| 426117.M446_6913 | PF13936 (PF00665) | ||||
| 426117.M446_5534 | PF13551 (PF00665) | ||||
| 426117.M446_0551 | (PF01799) | (plastid) | |||
| 426117.M446_2183 | (PF12399) | plastid | |||
| 426117.M446_6409 | (PF13518) | (plastid) | |||
| 426117.M446_1476 | PF13551 | (mitochondrial) | |||
| 426117.M446_2900 | PF13936 (PF00665) | ||||
| 426117.M446_1146 | + | (mitochondrial) | |||
| 426117.M446_2258 | + | (PF09361) | |||
| 426117.M446_5046 | (PF13692) | (ER) | |||
| 426117.M446_5592 | PF13936 (PF00665) | ||||
| 426117.M446_3522 | (PF12399) | plastid | |||
| 426117.M446_1464 | PF13551 (PF00665) | ||||
| 426117.M446_5722 | (PF13692) (PF13579) | ||||
| 426117.M446_1001 | (PF17171) (PF17172) | ||||
| 426117.M446_1496 | PF13936 (PF00665) | ||||
| 426117.M446_5029 | + | (mitochondrial) | |||
| 426117.M446_0582 | PF13936 (PF00665) | ||||
| 426117.M446_1720 | (PF13692) (PF13579) | ||||
| 426117.M446_1723 | PF13936 (PF00665) | ||||
| 426117.M446_4006 | PF13936 (PF00665) | ||||
| 426117.M446_2519 | PF13936 (PF00665) | ||||
| 426117.M446_2309 | (PF12399) | (mitochondrial) | |||
| 426117.M446_2798 | PF13551 (PF00665) | ||||
| 426117.M446_2801 | PF13936 (PF00665) | ||||
| 426117.M446_1978 | (PF12399) | (plastid) | |||
| 426117.M446_3999 | (PF13692) | plastid | |||
| 426117.M446_6901 | (PF08447) | (ER) | |||
| 426117.M446_2452 | PF13551 (PF00665) | ||||
| 426117.M446_1380 | (PF08447) | (mitochondrial) | |||
| 426117.M446_4387 | (PF04577) | (plastid) | |||
| 426117.M446_3368 | PF13936 (PF00665) | ||||
| 426117.M446_3114 | (PF08795) | (mitochondrial) | |||
| 426117.M446_3807 | PF13936 (PF00665) | ||||
| 426117.M446_2203 | (PF08447) | (ER) | |||
| 426117.M446_4304 | (PF17171) (PF17172) | ||||
| 426117.M446_1446 | PF13936 (PF00665) | ||||
| 426117.M446_6808 | (PF14701) | (ER) | |||
| 426117.M446_1510 | PF13551 (PF00665) | ||||
| 426117.M446_3888 | PF13551 (PF00665) | ||||
| 426117.M446_4700 | PF13551 (PF00665) | ||||
| 426117.M446_4288 | (PF13518) | (plastid) | |||
| 426117.M446_6732 | PF13936 (PF00665) | ||||
| 426117.M446_1053 | (PF08447) | ||||
| 426117.M446_4023 | (PF13692) | ||||
| 426117.M446_5196 | + | ||||
| 426117.M446_0827 | (PF08447) | ||||
| 426117.M446_4034 | (PF13692) | ||||
| 426117.M446_0596 | (PF12399) | ||||
| 426117.M446_5170 | (PF08447) | ||||
| 426117.M446_5173 | (PF06745) | ||||
| 426117.M446_4960 | (PF04577) | ||||
| 426117.M446_4782 | (PF13632) | ||||
| 426117.M446_2520 | (PF00665) | ||||
| 426117.M446_5439 | PF05212 | ||||
| 426117.M446_5435 | (PF12399) | ||||
| 426117.M446_3273 | + | ||||
| 426117.M446_5336 | PF12142 | ||||
| 426117.M446_6018 | + | ||||
| 426117.M446_0266 | + | ||||
| 426117.M446_4943 | (PF13692) | ||||
| 426117.M446_0087 | (PF13692) | ||||
| 426117.M446_3681 | (PF05239) | ||||
| 426117.M446_1135 | (PF00211) | ||||
| 426117.M446_2813 | (PF00211) | ||||
| 426117.M446_2811 | (PF02371) | ||||
| 426117.M446_5457 | (PF10013) | not used | |||
| 426117.M446_3478 | + | ||||
| 426117.M446_2669 | (PF01799) | ||||
| 426117.M446_6174 | + | ||||
| 426117.M446_3046 | (PF01799) | ||||
| 426117.M446_6567 | + | ||||
| 426117.M446_3851 | (PF02371) | ||||
| 426117.M446_4315 | + | ||||
| 426117.M446_2129 | (PF12399) | ||||
| 426117.M446_6603 | + | ||||
| 426117.M446_0760 | (PF12399) | ||||
| 426117.M446_2852 | (PF08447) | ||||
| 426117.M446_4645 | (PF13458) | ||||
| 426117.M446_5597 | + | ||||
| 426117.M446_5540 | (PF02245) | ||||
| 426117.M446_6939 | + | ||||
| 426117.M446_6938 | (PF05050) | ||||
| 426117.M446_1070 | (PF13692) | ||||
| 426117.M446_1453 | (PF02371) | ||||
| 426117.M446_0931 | (PF05239) | ||||
| 426117.M446_6091 | (PF13579) | ||||
| 426117.M446_6899 | + | ||||
| 426117.M446_5723 | (PF05050) | ||||
| 426117.M446_5724 | (PF09361) | ||||
| 426117.M446_1983 | (PF01799) | ||||
| 426117.M446_3160 | + | ||||
| 426117.M446_1294 | (PF01812) | ||||
| 426117.M446_0916 | (PF06119) | ||||
| 426117.M446_4501 | (PF05532) | ||||
| 426117.M446_3338 | (PF13276) | ||||
| 426117.M446_3626 | (PF08447) | ||||
| 426117.M446_5741 | (PF09361) | ||||
| 426117.M446_2212 | (PF09511) | ||||
| 426117.M446_2902 | (PF01812) | ||||
| 426117.M446_4823 | (PF05050) | ||||
| 426117.M446_4355 | (PF08447) | ||||
| 426117.M446_4172 | (PF02371) | ||||
| 426117.M446_5885 | (PF00211) | ||||
| 426117.M446_2683 | (PF08447) | ||||
| 426117.M446_5945 | (PF04577) | ||||
| 426117.M446_6772 | (PF00211) | ||||
| 426117.M446_6445 | (PF08447) | ||||
| 426117.M446_3122 | (PF04577) | ||||
| 426117.M446_1257 | (PF09361) | ||||
| 426117.M446_0784 | (PF09361) | ||||
| 426117.M446_0788 | (PF02245) | ||||
| 426117.M446_3872 | + | ||||
| 426117.M446_2000 | (PF12471) | ||||
| 426117.M446_5921 | (PF06745) | ||||
| 426117.M446_5596 | (PF13276) | ||||
| 426117.M446_5594 | (PF02371) | ||||
| 426117.M446_5595 | (PF00665) | ||||
| 426117.M446_6769 | + | ||||
| 426117.M446_0621 | + | ||||
| 426117.M446_0330 | + | ||||
| 426117.M446_5906 | (PF00211) | ||||
| 426117.M446_1810 | (PF04654) | ||||
| 426117.M446_2045 | (PF08447) | ||||
| 426117.M446_2735 | (PF03073) | ||||
| 426117.M446_4712 | (PF06745) | ||||
| 426117.M446_4711 | (PF08447) | ||||
| 426117.M446_6729 | + | ||||
| 426117.M446_4278 | (PF05532) | not used | |||
| 426117.M446_2822 | (PF05239) | ||||
| 426117.M446_2947 | (PF09361) | ||||
| 426117.M446_5639 | (PF12399) | ||||
| 426117.M446_1858 | (PF05532) | ||||
| 426117.M446_2554 | + | ||||
| 426117.M446_4733 | + | ||||
| 426117.M446_2773 | (PF05050) | ||||
| 426117.M446_1009 | (PF13276) | ||||
| 426117.M446_3346 | + | ||||
| 426117.M446_3914 | (PF08447) | ||||
| 426117.M446_6069 | (PF01799) | ||||
| 426117.M446_3769 | (PF13632) | ||||
| 426117.M446_2575 | (PF01799) | ||||
| 426117.M446_3246 | (PF12399) | ||||
| 426117.M446_5187 | + | ||||
| 426117.M446_6519 | + | ||||
| 426117.M446_4918 | (PF00847) | ||||
| 426117.M446_2510 | (PF02371) | ||||
| 426117.M446_2518 | (PF02371) | ||||
| 426117.M446_4415 | + | ||||
| 426117.M446_4215 | (PF08447) | ||||
| 426117.M446_2796 | (PF00211) | ||||
| 426117.M446_5441 | (PF01799) | ||||
| 426117.M446_1545 | + | ||||
| 426117.M446_6491 | (PF12399) | ||||
| 426117.M446_4630 | (PF08447) | ||||
| 426117.M446_4638 | (PF08447) | ||||
| 426117.M446_0253 | (PF04577) | ||||
| 426117.M446_1699 | (PF03959) | ||||
| 426117.M446_6950 | (PF05050) | ||||
| 426117.M446_2803 | (PF00211) | ||||
| 426117.M446_3072 | (PF01812) | ||||
| 426117.M446_6618 | (PF05239) | ||||
| 426117.M446_4793 | (PF01799) | ||||
| 426117.M446_2614 | + | ||||
| 426117.M446_2617 | (PF12399) | ||||
| 426117.M446_2613 | + | ||||
| 426117.M446_4423 | (PF00211) | ||||
| 426117.M446_1104 | (PF05491) | ||||
| 426117.M446_2138 | (PF08447) | ||||
| 426117.M446_2130 | (PF12399) | ||||
| 426117.M446_6902 | (PF08447) | ||||
| 426117.M446_2636 | + | ||||
| 426117.M446_4442 | (PF08447) | ||||
| 426117.M446_1539 | (PF05532) | ||||
| 426117.M446_0717 | (PF05532) | not used | |||
| 426117.M446_4124 | + | ||||
| 426117.M446_4129 | + | ||||
| 426117.M446_5383 | (PF05532) | ||||
| 426117.M446_5381 | (PF05532) | ||||
| 426117.M446_5380 | (PF05532) | ||||
| 426117.M446_0921 | (PF00211) | ||||
| 426117.M446_3364 | (PF00665) | ||||
| 426117.M446_0546 | (PF12399) | ||||
| 426117.M446_2175 | (PF05239) | ||||
| 426117.M446_1418 | (PF01799) | ||||
| 426117.M446_0533 | (PF00211) | ||||
| 426117.M446_1281 | (PF13692) | ||||
| 426117.M446_5502 | (PF13506) | ||||
| 426117.M446_3166 | (PF12399) | ||||
| 426117.M446_5697 | (PF01799) | ||||
| 426117.M446_5693 | (PF12399) | ||||
| 426117.M446_4167 | (PF02371) | ||||
| 426117.M446_0675 | + | ||||
| 426117.M446_1528 | (PF00211) | ||||
| 426117.M446_2205 | + | ||||
| 426117.M446_3138 | (PF01799) | ||||
| 426117.M446_1795 | (PF12399) | ||||
| 426117.M446_1796 | (PF12399) | ||||
| 426117.M446_5547 | (PF02371) | ||||
| 426117.M446_5237 | (PF09361) | ||||
| 426117.M446_5238 | (PF09361) | ||||
| 426117.M446_5602 | (PF05239) | ||||
| 426117.M446_6666 | (PF00656) | ||||
| 426117.M446_6150 | (PF13518) | ||||
| 426117.M446_0655 | (PF08447) | ||||
| 426117.M446_0300 | (PF08447) | ||||
| 426117.M446_3992 | + | ||||
| 426117.M446_3987 | (PF13692) | ||||
| 426117.M446_3986 | (PF13692) | ||||
| 426117.M446_3842 | (PF12399) | ||||
| 426117.M446_0257 | + | ||||
| 426117.M446_1229 | (PF08447) | ||||
| 426117.M446_1215 | (PF02371) | ||||
| 426117.M446_6826 | (PF02933) | ||||
| 426117.M446_6828 | + | ||||
| 426117.M446_1687 | + | ||||
| 426117.M446_5910 | (PF08447) | ||||
| 426117.M446_1809 | (PF08447) | ||||
| 426117.M446_3536 | + | ||||
| 426117.M446_4985 | (PF13579) | ||||
| 426117.M446_5584 | (PF08447) | ||||
| 426117.M446_2056 | (PF05050) | ||||
| 426117.M446_6110 | (PF08447) | ||||
| 426117.M446_6442 | (PF08447) | ||||
| 426117.M446_2268 | (PF12399) | ||||
| 426117.M446_3084 | + | ||||
| 426117.M446_1821 | + | ||||
| 426117.M446_1775 | (PF08447) | ||||
| 426117.M446_0288 | + | ||||
| 426117.M446_4707 | (PF13276) | ||||
| 426117.M446_4064 | (PF05050) | ||||
| 426117.M446_4014 | (PF02371) | ||||
| 426117.M446_5626 | (PF13518) | ||||
| 426117.M446_1848 | + | ||||
| 426117.M446_1710 | + | ||||
| 426117.M446_1719 | (PF13579) | ||||
| 426117.M446_4007 | + | ||||
| 426117.M446_1526 | (PF08447) | ||||
| 426117.M446_4005 | (PF02371) | ||||
| 426117.M446_6067 | (PF01442) | ||||
| 426117.M446_4927 | + | ||||
| 426117.M446_2562 | (PF01799) | ||||
| 426117.M446_5290 | (PF08447) | ||||
| 426117.M446_5293 | (PF00211) | ||||
| 426117.M446_3902 | (PF08447) |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
- T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: NO (FDR = 12.5 %)
- Functional Type IV secretion system: YES (FDR = 7.2 %)
Estimated copy number = 0.0 (0/10 KEGG proteins)
- Functional Type VI secretion system: NO (FDR = 7.7 %)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
Estimated copy number = 0.0 (0/10 KEGG proteins)
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Contact
- +43 1 4277 76681
- +43 1 4277 876681
- contact.cube@univie.ac.at
