Metamenu

Effective results for Clostridium leptum DSM 753 (eggnog40)

Summary

Number of putative secreted proteins: 106
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 28 eukaryotic-like domains, contained in 106 proteins (9 high, 97 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
428125.CLOLEP_01532(PF00438) (PF02773) (PF02772)(mitochondrial); mitochondrial
428125.CLOLEP_01111(PF06964)mitochondrial; (mitochondrial)
428125.CLOLEP_02306(PF00239)(mitochondrial)
428125.CLOLEP_03043(PF06541)ER
428125.CLOLEP_02790(PF02906)(mitochondrial)
428125.CLOLEP_01320(PF05738)ER
428125.CLOLEP_00548(PF06541)(ER)
428125.CLOLEP_02353(PF01554)(ER)
428125.CLOLEP_01087(PF01554)(mitochondrial)
428125.CLOLEP_00334(PF01554)ER; (ER)
428125.CLOLEP_02767(PF01554)ER; (ER)
428125.CLOLEP_00321(PF01116)mitochondrial
428125.CLOLEP_02259(PF00438) (PF02773) (PF02772)
428125.CLOLEP_02256(PF05738)ER
428125.CLOLEP_00478(PF01554)mitochondrial
428125.CLOLEP_00700(PF01554)(ER)
428125.CLOLEP_03600(PF01116)(mitochondrial)
428125.CLOLEP_03939(PF01554)ER; (ER)
428125.CLOLEP_03410(PF05738)(mitochondrial); (ER)
428125.CLOLEP_03621(PF05738)(ER)
428125.CLOLEP_03625(PF01554)ER
428125.CLOLEP_00773(PF05738)ER
428125.CLOLEP_00779(PF00438) (PF02773) (PF02772)
428125.CLOLEP_03194PF12215 PF04685
428125.CLOLEP_00889PF03727 PF00349
428125.CLOLEP_01110(PF01156)(ER)
428125.CLOLEP_01567(PF02421)plastid
428125.CLOLEP_00562(PF06541)(mitochondrial)
428125.CLOLEP_01314(PF05257)(ER)
428125.CLOLEP_00853PF12215 PF04685
428125.CLOLEP_00480(PF01554)(ER)
428125.CLOLEP_00474PF12215 PF04685
428125.CLOLEP_00399(PF13597)(mitochondrial)
428125.CLOLEP_01863(PF01554)(ER)
428125.CLOLEP_03475(PF00239)(mitochondrial)
428125.CLOLEP_02897(PF01554)(ER)
428125.CLOLEP_01107(PF06964) (PF03662)
428125.CLOLEP_01219(PF01554)(ER)
428125.CLOLEP_03207(PF13481)
428125.CLOLEP_02552(PF00239)
428125.CLOLEP_01201(PF00239)
428125.CLOLEP_00089(PF06964)
428125.CLOLEP_03834(PF13481)
428125.CLOLEP_03239(PF00239)
428125.CLOLEP_02308(PF00239)
428125.CLOLEP_02303(PF00239)
428125.CLOLEP_02301(PF00239)
428125.CLOLEP_01305PF11559
428125.CLOLEP_00096(PF01156)
428125.CLOLEP_03220(PF13481)
428125.CLOLEP_02152(PF02421)
428125.CLOLEP_00318(PF02421)
428125.CLOLEP_03813(PF13481)
428125.CLOLEP_02147(PF02938)
428125.CLOLEP_03568(PF02421)
428125.CLOLEP_02561(PF01554)
428125.CLOLEP_02217(PF01116)
428125.CLOLEP_01545(PF00239)
428125.CLOLEP_00052(PF06541)
428125.CLOLEP_03028(PF01554)
428125.CLOLEP_00933(PF01156)
428125.CLOLEP_02686PF01348
428125.CLOLEP_03017(PF00239)
428125.CLOLEP_03016(PF00239)
428125.CLOLEP_00595(PF01156)
428125.CLOLEP_02239(PF00239)
428125.CLOLEP_01528(PF00239)
428125.CLOLEP_02401PF01348
428125.CLOLEP_01849(PF01116)
428125.CLOLEP_00877(PF01554)
428125.CLOLEP_01055(PF01554)
428125.CLOLEP_01299(PF01156)
428125.CLOLEP_01297(PF01156)
428125.CLOLEP_00678PF04587
428125.CLOLEP_00016(PF01116)
428125.CLOLEP_03111(PF13481)
428125.CLOLEP_02882(PF01554)
428125.CLOLEP_00805(PF05257)
428125.CLOLEP_01860(PF01116)
428125.CLOLEP_00812(PF06964)
428125.CLOLEP_03413(PF05738)
428125.CLOLEP_03412PF01348
428125.CLOLEP_03418(PF05257)
428125.CLOLEP_00822(PF00239)
428125.CLOLEP_00825(PF00239)
428125.CLOLEP_00827(PF00239)
428125.CLOLEP_01392(PF13597)
428125.CLOLEP_01937(PF02906)
428125.CLOLEP_01939(PF02906)
428125.CLOLEP_03893(PF02906)
428125.CLOLEP_02879(PF00239)
428125.CLOLEP_02058(PF13597)
428125.CLOLEP_03885(PF02906)
428125.CLOLEP_01909(PF14249)
428125.CLOLEP_03860(PF13481)
428125.CLOLEP_03866(PF00239)
428125.CLOLEP_03362(PF06964)
428125.CLOLEP_01222(PF02938)
428125.CLOLEP_01737(PF00239)
428125.CLOLEP_02859(PF12646)
428125.CLOLEP_03320(PF01991)
428125.CLOLEP_03454(PF05257)
428125.CLOLEP_03459(PF00239)
428125.CLOLEP_02587(PF01554)
428125.CLOLEP_03521(PF04098)
428125.CLOLEP_01103(PF06964)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================