Effective results for Eubacterium dolichum DSM 3991 (eggnog40)

Summary

Number of putative secreted proteins: 42
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 18 eukaryotic-like domains, contained in 42 proteins (3 high, 39 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
428127.EUBDOL_00177				(PF13653)	ER
428127.EUBDOL_01697				(PF13320)	(ER)
428127.EUBDOL_01966				(PF11074)	(mitochondrial)
428127.EUBDOL_01841				(PF06777)	(mitochondrial)
428127.EUBDOL_02259				(PF11070)	ER
428127.EUBDOL_02092				(PF13276)
428127.EUBDOL_02071				(PF13276)
428127.EUBDOL_02077				(PF13276)
428127.EUBDOL_01670				(PF13276)
428127.EUBDOL_01248				(PF04098)
428127.EUBDOL_02051				(PF13276)
428127.EUBDOL_01139				(PF13276)
428127.EUBDOL_00997				(PF13276)
428127.EUBDOL_01824				(PF13276)
428127.EUBDOL_01353				(PF02421)
428127.EUBDOL_00771				(PF13276)
428127.EUBDOL_00343				(PF00958)
428127.EUBDOL_01968				(PF00882)
428127.EUBDOL_02006				(PF02421)
428127.EUBDOL_00151				(PF13320)
428127.EUBDOL_00096				(PF01807)
428127.EUBDOL_01781				(PF02421)
428127.EUBDOL_00408				(PF01807)
428127.EUBDOL_02377				PF12017
428127.EUBDOL_01913				(PF02421)
428127.EUBDOL_01450				(PF00834)
428127.EUBDOL_01438				(PF12646)
428127.EUBDOL_00058				(PF00958)
428127.EUBDOL_02170				(PF13276)
428127.EUBDOL_01837				PF14853
428127.EUBDOL_00335				(PF03266)
428127.EUBDOL_01089				(PF13276)
428127.EUBDOL_01550				PF07453
428127.EUBDOL_00688				(PF00834)
428127.EUBDOL_02163				(PF13276)
428127.EUBDOL_00629				(PF00834)
428127.EUBDOL_01636				(PF13276)
428127.EUBDOL_01848				(PF01991)
428127.EUBDOL_01996				(PF13276)
428127.EUBDOL_01949				(PF00882)
428127.EUBDOL_01046				(PF01807)
428127.EUBDOL_00392				(PF01807)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================