Effective results for Methylobacterium nodulans ORS 2060 (eggnog40)
Summary
Number of putative secreted proteins: 402
- Predicted by T4SEpre: 105
- Predicted by EffectiveELD: 53 eukaryotic-like domains, contained in 322 proteins (95 high, 227 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
| Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
|---|---|---|---|---|---|
| 460265.Mnod_1326 | + | (PF00656) | ER | ||
| 460265.Mnod_1446 | (PF02887) (PF00224) | (mitochondrial) | |||
| 460265.Mnod_5205 | + | (PF13458) | ER | ||
| 460265.Mnod_2104 | (PF02887) (PF00224) | (mitochondrial) | |||
| 460265.Mnod_0709 | (PF13458) | ER | |||
| 460265.Mnod_6461 | (PF13458) | ER | |||
| 460265.Mnod_2526 | (PF13458) | ER | |||
| 460265.Mnod_3964 | (PF13458) | mitochondrial | |||
| 460265.Mnod_6256 | PF13384 | (mitochondrial) | |||
| 460265.Mnod_0586 | PF13384 | (mitochondrial); (plastid) | |||
| 460265.Mnod_5327 | (PF13458) | ER | |||
| 460265.Mnod_0300 | (PF13458) | ER | |||
| 460265.Mnod_6429 | PF13384 | (mitochondrial); (plastid) | |||
| 460265.Mnod_5657 | + | ER | |||
| 460265.Mnod_7650 | (PF13438) | ER | |||
| 460265.Mnod_3741 | + | ER | |||
| 460265.Mnod_7180 | + | mitochondrial; ER | |||
| 460265.Mnod_6587 | (PF13458) | (mitochondrial) | |||
| 460265.Mnod_1164 | (PF13458) | ER | |||
| 460265.Mnod_6976 | (PF09588) | (ER) | |||
| 460265.Mnod_3616 | (PF13578) | (mitochondrial) | |||
| 460265.Mnod_3282 | (PF13458) | ER | |||
| 460265.Mnod_0542 | + | (ER); (plastid) | |||
| 460265.Mnod_2726 | (PF13458) | mitochondrial | |||
| 460265.Mnod_4940 | + | ER | |||
| 460265.Mnod_1084 | + | ER | |||
| 460265.Mnod_0659 | (PF13458) | mitochondrial | |||
| 460265.Mnod_0026 | (PF13458) | mitochondrial | |||
| 460265.Mnod_0002 | + | (mitochondrial) | |||
| 460265.Mnod_0655 | (PF02887) (PF00224) | (mitochondrial) | |||
| 460265.Mnod_2952 | + | ER | |||
| 460265.Mnod_2951 | (PF00656) | ER | |||
| 460265.Mnod_0630 | PF13384 | (mitochondrial); (plastid) | |||
| 460265.Mnod_1548 | (PF13458) | (mitochondrial) | |||
| 460265.Mnod_4449 | (PF13458) | ER | |||
| 460265.Mnod_1042 | + | (mitochondrial) | |||
| 460265.Mnod_7500 | PF13384 | (mitochondrial); (plastid) | |||
| 460265.Mnod_3553 | PF13384 | (mitochondrial); (plastid) | |||
| 460265.Mnod_6104 | PF13384 | (mitochondrial); (plastid) | |||
| 460265.Mnod_1335 | (PF00656) | ER | |||
| 460265.Mnod_0969 | (PF13458) | ER | |||
| 460265.Mnod_5293 | + | ER | |||
| 460265.Mnod_0504 | + | ER | |||
| 460265.Mnod_3279 | (PF13458) | ER | |||
| 460265.Mnod_5949 | + | (mitochondrial) | |||
| 460265.Mnod_1636 | + | ER | |||
| 460265.Mnod_5570 | (PF05050) | (mitochondrial) | |||
| 460265.Mnod_4371 | (PF01343) | ER | |||
| 460265.Mnod_7139 | (PF01223) | ER | |||
| 460265.Mnod_3823 | (PF09588) | mitochondrial; plastid | |||
| 460265.Mnod_6182 | (PF00656) | ER | |||
| 460265.Mnod_3910 | PF13384 | (mitochondrial); (plastid) | |||
| 460265.Mnod_4357 | (PF13692) | ER; (ER) | |||
| 460265.Mnod_3748 | (PF13458) | ER | |||
| 460265.Mnod_6361 | + | mitochondrial | |||
| 460265.Mnod_0331 | (PF13458) | ER | |||
| 460265.Mnod_5353 | (PF13692) | ER | |||
| 460265.Mnod_1194 | (PF13458) | ER | |||
| 460265.Mnod_1190 | (PF13458) | ER | |||
| 460265.Mnod_1330 | (PF06119) | (ER); (mitochondrial) | |||
| 460265.Mnod_5336 | (PF00656) | ER | |||
| 460265.Mnod_5333 | (PF00656) | (mitochondrial) | |||
| 460265.Mnod_5737 | + | ER | |||
| 460265.Mnod_2431 | (PF00656) | ER | |||
| 460265.Mnod_0807 | (PF13458) | ER | |||
| 460265.Mnod_7349 | (PF00656) | ER | |||
| 460265.Mnod_3421 | (PF13458) | ER | |||
| 460265.Mnod_5317 | (PF13458) | ER | |||
| 460265.Mnod_4994 | (PF13438) | (mitochondrial); plastid | |||
| 460265.Mnod_7642 | + | ER | |||
| 460265.Mnod_3442 | (PF13480) | mitochondrial | |||
| 460265.Mnod_2861 | (PF13632) | (ER) | |||
| 460265.Mnod_2713 | + | (mitochondrial) | |||
| 460265.Mnod_5311 | + | ER | |||
| 460265.Mnod_5462 | (PF13538) (PF13604) | (mitochondrial) | |||
| 460265.Mnod_7381 | + | (mitochondrial) | |||
| 460265.Mnod_2809 | + | (mitochondrial) | |||
| 460265.Mnod_5607 | (PF13692) | ER; (ER) | |||
| 460265.Mnod_6556 | PF02357 | (mitochondrial) | |||
| 460265.Mnod_1935 | (PF13458) | ER | |||
| 460265.Mnod_2287 | + | ER | |||
| 460265.Mnod_5621 | PF13384 | (mitochondrial); (plastid) | |||
| 460265.Mnod_1702 | (PF05050) | mitochondrial | |||
| 460265.Mnod_1709 | (PF13578) | mitochondrial | |||
| 460265.Mnod_6282 | (PF09588) | (ER) | |||
| 460265.Mnod_3456 | PF13384 | (mitochondrial); (plastid) | |||
| 460265.Mnod_2584 | PF10551 | mitochondrial | |||
| 460265.Mnod_1098 | (PF13458) | (ER); (mitochondrial) | |||
| 460265.Mnod_4914 | (PF01391) | ER | |||
| 460265.Mnod_4000 | (PF05201) | (mitochondrial); (plastid) | |||
| 460265.Mnod_3585 | (PF09588) | (ER) | |||
| 460265.Mnod_2184 | + | ER | |||
| 460265.Mnod_7057 | (PF13458) | mitochondrial; ER | |||
| 460265.Mnod_3114 | (PF13458) | ER | |||
| 460265.Mnod_3119 | (PF13458) | ER | |||
| 460265.Mnod_0628 | + | ER | |||
| 460265.Mnod_1534 | + | ER | |||
| 460265.Mnod_0951 | (PF05532) | ER | |||
| 460265.Mnod_5028 | (PF13438) | mitochondrial | |||
| 460265.Mnod_7243 | (PF13578) | mitochondrial | |||
| 460265.Mnod_5491 | + | ER | |||
| 460265.Mnod_4450 | (PF13458) | ER | |||
| 460265.Mnod_0201 | PF07821 | ER | |||
| 460265.Mnod_4439 | (PF10908) | (mitochondrial) | |||
| 460265.Mnod_0226 | (PF13458) | ER | |||
| 460265.Mnod_1741 | (PF13458) | ER | |||
| 460265.Mnod_2480 | (PF00656) | ER | |||
| 460265.Mnod_0503 | + | ER | |||
| 460265.Mnod_6151 | PF13384 | (mitochondrial); (plastid) | |||
| 460265.Mnod_0064 | (PF13458) | mitochondrial; (mitochondrial) | |||
| 460265.Mnod_5541 | + | ER | |||
| 460265.Mnod_1592 | (PF01391) | ER | |||
| 460265.Mnod_6811 | (PF14087) | ER | |||
| 460265.Mnod_0864 | (PF05050) | (mitochondrial) | |||
| 460265.Mnod_2381 | + | ER | |||
| 460265.Mnod_3928 | (PF13438) | mitochondrial | |||
| 460265.Mnod_6831 | PF13384 | (mitochondrial); (plastid) | |||
| 460265.Mnod_2543 | + | ER | |||
| 460265.Mnod_2639 | (PF09588) | (ER) | |||
| 460265.Mnod_5502 | (PF00656) | ER | |||
| 460265.Mnod_2610 | + | (PF01391) | |||
| 460265.Mnod_1987 | PF02357 | (mitochondrial) | |||
| 460265.Mnod_4756 | (PF13538) (PF13604) | ||||
| 460265.Mnod_3436 | (PF17042) (PF07005) | ||||
| 460265.Mnod_4303 | + | (mitochondrial) | |||
| 460265.Mnod_3841 | (PF13538) (PF13604) | ||||
| 460265.Mnod_3846 | PF02357 | (mitochondrial) | |||
| 460265.Mnod_2460 | (PF01343) | (mitochondrial) | |||
| 460265.Mnod_0430 | (PF10908) | (plastid) | |||
| 460265.Mnod_7371 | (PF13589) | (mitochondrial) | |||
| 460265.Mnod_7615 | + | (PF09361) | |||
| 460265.Mnod_0473 | PF02371 | (plastid) | |||
| 460265.Mnod_2693 | (PF13480) | (mitochondrial) | |||
| 460265.Mnod_5077 | (PF13538) (PF13604) | ||||
| 460265.Mnod_5032 | PF02371 | (plastid) | |||
| 460265.Mnod_6107 | (PF04120) | (plastid) | |||
| 460265.Mnod_2210 | (PF04800) | plastid | |||
| 460265.Mnod_4089 | (PF13538) (PF13604) | ||||
| 460265.Mnod_7547 | (PF14701) | (ER) | |||
| 460265.Mnod_5962 | (PF02887) (PF00224) | ||||
| 460265.Mnod_4610 | + | (mitochondrial) | |||
| 460265.Mnod_2622 | (PF13538) (PF13604) | ||||
| 460265.Mnod_6988 | (PF03796) (PF00772) | ||||
| 460265.Mnod_4633 | (PF03796) (PF00772) | ||||
| 460265.Mnod_1466 | (PF17042) (PF07005) | ||||
| 460265.Mnod_0595 | (PF01343) | (plastid) | |||
| 460265.Mnod_4654 | (PF17042) (PF07005) | ||||
| 460265.Mnod_4330 | (PF04577) | (plastid) | |||
| 460265.Mnod_2419 | (PF17042) (PF07005) | ||||
| 460265.Mnod_2393 | + | plastid | |||
| 460265.Mnod_6412 | (PF04120) | (plastid) | |||
| 460265.Mnod_4876 | (PF13692) (PF05050) | ||||
| 460265.Mnod_0351 | + | (PF09361) | |||
| 460265.Mnod_6905 | PF02371 | (plastid) | |||
| 460265.Mnod_6016 | PF02371 | (plastid) | |||
| 460265.Mnod_3606 | + | (mitochondrial) | |||
| 460265.Mnod_7606 | + | (mitochondrial) | |||
| 460265.Mnod_4544 | (PF01812) | (mitochondrial) | |||
| 460265.Mnod_4249 | (PF13538) (PF13604) | ||||
| 460265.Mnod_3562 | (PF03796) (PF00772) | ||||
| 460265.Mnod_5023 | (PF05201) | plastid | |||
| 460265.Mnod_3090 | (PF02887) (PF00224) | ||||
| 460265.Mnod_5117 | (PF13458) | (ER) | |||
| 460265.Mnod_2483 | PF02357 | (mitochondrial) | |||
| 460265.Mnod_2487 | (PF13538) (PF13604) | ||||
| 460265.Mnod_0181 | PF02371 | (plastid) | |||
| 460265.Mnod_6854 | PF13384 | plastid | |||
| 460265.Mnod_6270 | (PF03796) (PF00772) | ||||
| 460265.Mnod_6467 | PF05598 | ||||
| 460265.Mnod_6465 | PF05598 | ||||
| 460265.Mnod_7596 | PF05598 | ||||
| 460265.Mnod_3698 | (PF13458) | ||||
| 460265.Mnod_2619 | PF02357 | ||||
| 460265.Mnod_5694 | + | ||||
| 460265.Mnod_5343 | PF02371 | ||||
| 460265.Mnod_4341 | (PF03050) | ||||
| 460265.Mnod_5832 | PF02371 | ||||
| 460265.Mnod_7475 | (PF12200) | ||||
| 460265.Mnod_0876 | PF02371 | ||||
| 460265.Mnod_2233 | PF05598 | ||||
| 460265.Mnod_1980 | PF08774 | ||||
| 460265.Mnod_4801 | (PF04120) | ||||
| 460265.Mnod_0853 | (PF03050) | ||||
| 460265.Mnod_0852 | PF05598 | ||||
| 460265.Mnod_4662 | (PF13692) | ||||
| 460265.Mnod_4665 | (PF13632) | ||||
| 460265.Mnod_6406 | (PF03050) | ||||
| 460265.Mnod_6407 | PF02371 | ||||
| 460265.Mnod_1668 | (PF05532) | not used | |||
| 460265.Mnod_3778 | (PF04577) | ||||
| 460265.Mnod_2130 | (PF01609) | ||||
| 460265.Mnod_0044 | (PF13589) | ||||
| 460265.Mnod_4866 | (PF01609) | ||||
| 460265.Mnod_4863 | (PF01812) | ||||
| 460265.Mnod_4869 | (PF02823) | ||||
| 460265.Mnod_0308 | PF05598 | ||||
| 460265.Mnod_6689 | (PF04577) | ||||
| 460265.Mnod_7336 | (PF05532) | ||||
| 460265.Mnod_4304 | (PF05050) | ||||
| 460265.Mnod_4307 | (PF13692) | ||||
| 460265.Mnod_1823 | (PF13632) | ||||
| 460265.Mnod_7651 | (PF14087) | ||||
| 460265.Mnod_5460 | (PF04577) | ||||
| 460265.Mnod_6913 | (PF02823) | ||||
| 460265.Mnod_7351 | PF05063 | ||||
| 460265.Mnod_3183 | (PF13692) | ||||
| 460265.Mnod_2326 | (PF09361) | ||||
| 460265.Mnod_4983 | (PF13589) | ||||
| 460265.Mnod_7634 | + | ||||
| 460265.Mnod_3849 | PF05598 | ||||
| 460265.Mnod_7379 | (PF02823) | ||||
| 460265.Mnod_3615 | PF02371 | ||||
| 460265.Mnod_6390 | (PF09361) | ||||
| 460265.Mnod_6022 | (PF12200) | ||||
| 460265.Mnod_1241 | (PF13458) | ||||
| 460265.Mnod_3861 | (PF01343) | ||||
| 460265.Mnod_5427 | PF02371 | ||||
| 460265.Mnod_6956 | (PF01609) | ||||
| 460265.Mnod_4945 | (PF00847) | ||||
| 460265.Mnod_6625 | + | ||||
| 460265.Mnod_5212 | (PF13692) | ||||
| 460265.Mnod_4038 | (PF05201) | ||||
| 460265.Mnod_2197 | (PF01343) | ||||
| 460265.Mnod_2993 | PF05598 | ||||
| 460265.Mnod_2996 | + | ||||
| 460265.Mnod_1503 | + | ||||
| 460265.Mnod_0903 | PF05598 | ||||
| 460265.Mnod_2763 | (PF16114) | ||||
| 460265.Mnod_3379 | (PF01609) | ||||
| 460265.Mnod_2970 | (PF01609) | ||||
| 460265.Mnod_7046 | (PF13438) | ||||
| 460265.Mnod_0928 | (PF01609) | ||||
| 460265.Mnod_0927 | PF05598 | ||||
| 460265.Mnod_5780 | PF02357 | ||||
| 460265.Mnod_2783 | + | ||||
| 460265.Mnod_0555 | (PF13438) | ||||
| 460265.Mnod_0557 | (PF03050) | ||||
| 460265.Mnod_6121 | (PF01609) | ||||
| 460265.Mnod_0639 | PF02371 | ||||
| 460265.Mnod_0636 | + | ||||
| 460265.Mnod_0633 | (PF03050) | ||||
| 460265.Mnod_0942 | (PF01609) | ||||
| 460265.Mnod_0799 | (PF01223) | ||||
| 460265.Mnod_1663 | PF02371 | ||||
| 460265.Mnod_7502 | PF05598 | ||||
| 460265.Mnod_3558 | PF02357 | ||||
| 460265.Mnod_2684 | + | ||||
| 460265.Mnod_2688 | PF05598 | ||||
| 460265.Mnod_2689 | (PF01609) | ||||
| 460265.Mnod_2061 | (PF13692) | ||||
| 460265.Mnod_0961 | (PF13480) | ||||
| 460265.Mnod_4428 | PF02371 | ||||
| 460265.Mnod_5079 | PF05063 | ||||
| 460265.Mnod_7561 | (PF02933) | ||||
| 460265.Mnod_3837 | PF08774 | ||||
| 460265.Mnod_6808 | + | ||||
| 460265.Mnod_6804 | PF05598 | ||||
| 460265.Mnod_2492 | PF08774 | ||||
| 460265.Mnod_4094 | PF08774 | ||||
| 460265.Mnod_6639 | PF05598 | ||||
| 460265.Mnod_2023 | (PF13458) | ||||
| 460265.Mnod_2029 | PF05598 | ||||
| 460265.Mnod_1931 | + | ||||
| 460265.Mnod_1939 | + | ||||
| 460265.Mnod_0880 | PF02371 | ||||
| 460265.Mnod_0081 | (PF09361) | ||||
| 460265.Mnod_0086 | (PF05532) | not used | |||
| 460265.Mnod_4611 | PF05598 | ||||
| 460265.Mnod_6618 | (PF13480) | ||||
| 460265.Mnod_2627 | PF08774 | ||||
| 460265.Mnod_3931 | (PF05201) | ||||
| 460265.Mnod_3938 | PF02371 | ||||
| 460265.Mnod_5394 | (PF03796) | ||||
| 460265.Mnod_0271 | PF02371 | ||||
| 460265.Mnod_7136 | PF02371 | ||||
| 460265.Mnod_0309 | + | ||||
| 460265.Mnod_7584 | + | ||||
| 460265.Mnod_4639 | PF05598 | ||||
| 460265.Mnod_6676 | PF02357 | ||||
| 460265.Mnod_6181 | (PF03050) | ||||
| 460265.Mnod_3919 | (PF13589) | ||||
| 460265.Mnod_3914 | (PF05532) | ||||
| 460265.Mnod_4359 | (PF13480) | ||||
| 460265.Mnod_1655 | (PF04800) | ||||
| 460265.Mnod_3217 | PF05598 | ||||
| 460265.Mnod_2377 | + | ||||
| 460265.Mnod_4332 | (PF13578) | ||||
| 460265.Mnod_6141 | PF02371 | ||||
| 460265.Mnod_3513 | + | ||||
| 460265.Mnod_1997 | (PF01343) | ||||
| 460265.Mnod_0822 | (PF07976) | ||||
| 460265.Mnod_1833 | PF02371 | ||||
| 460265.Mnod_7663 | (PF05050) | ||||
| 460265.Mnod_6207 | + | ||||
| 460265.Mnod_6209 | (PF05532) | ||||
| 460265.Mnod_5474 | + | ||||
| 460265.Mnod_1618 | PF02371 | ||||
| 460265.Mnod_4872 | (PF01812) | ||||
| 460265.Mnod_5558 | (PF13480) | ||||
| 460265.Mnod_0373 | PF02371 | ||||
| 460265.Mnod_7344 | (PF01609) | ||||
| 460265.Mnod_2337 | (PF09361) | ||||
| 460265.Mnod_3427 | (PF13458) | ||||
| 460265.Mnod_2590 | (PF04120) | ||||
| 460265.Mnod_2844 | + | ||||
| 460265.Mnod_7647 | + | ||||
| 460265.Mnod_5867 | (PF13480) | ||||
| 460265.Mnod_2454 | + | ||||
| 460265.Mnod_4859 | + | ||||
| 460265.Mnod_3994 | + | ||||
| 460265.Mnod_7626 | (PF01609) | ||||
| 460265.Mnod_6579 | + | ||||
| 460265.Mnod_5881 | (PF13692) | ||||
| 460265.Mnod_1179 | PF02371 | ||||
| 460265.Mnod_5888 | (PF13692) | ||||
| 460265.Mnod_6963 | + | ||||
| 460265.Mnod_5603 | (PF13692) | ||||
| 460265.Mnod_7602 | (PF01609) | ||||
| 460265.Mnod_4772 | PF02371 | ||||
| 460265.Mnod_0640 | (PF01609) | ||||
| 460265.Mnod_0645 | PF05598 | ||||
| 460265.Mnod_0466 | (PF07958) | ||||
| 460265.Mnod_0467 | (PF12471) | ||||
| 460265.Mnod_0463 | + | ||||
| 460265.Mnod_2752 | + | ||||
| 460265.Mnod_5081 | PF08774 | ||||
| 460265.Mnod_4972 | (PF13692) | ||||
| 460265.Mnod_1429 | (PF09361) | ||||
| 460265.Mnod_4285 | (PF01391) | ||||
| 460265.Mnod_7484 | (PF01609) | ||||
| 460265.Mnod_3342 | + | ||||
| 460265.Mnod_3346 | PF05598 | ||||
| 460265.Mnod_3839 | PF05063 | ||||
| 460265.Mnod_7033 | PF05598 | ||||
| 460265.Mnod_3133 | (PF05050) | ||||
| 460265.Mnod_1894 | PF02357 | ||||
| 460265.Mnod_2773 | PF02371 | ||||
| 460265.Mnod_5203 | (PF09361) | ||||
| 460265.Mnod_2100 | + | ||||
| 460265.Mnod_2103 | + | ||||
| 460265.Mnod_7202 | PF02371 | ||||
| 460265.Mnod_2988 | PF16575 | ||||
| 460265.Mnod_5586 | + | ||||
| 460265.Mnod_5588 | (PF13480) | ||||
| 460265.Mnod_1514 | + | ||||
| 460265.Mnod_7050 | (PF13589) | ||||
| 460265.Mnod_7053 | + | ||||
| 460265.Mnod_6893 | + | ||||
| 460265.Mnod_0687 | PF02371 | ||||
| 460265.Mnod_2796 | + | ||||
| 460265.Mnod_4939 | + | ||||
| 460265.Mnod_1212 | (PF13458) | ||||
| 460265.Mnod_4245 | PF08774 | ||||
| 460265.Mnod_4794 | PF02371 | ||||
| 460265.Mnod_0031 | (PF00656) | ||||
| 460265.Mnod_3560 | + | ||||
| 460265.Mnod_3566 | (PF01609) | ||||
| 460265.Mnod_2964 | PF05598 | ||||
| 460265.Mnod_6303 | (PF13578) | ||||
| 460265.Mnod_6306 | (PF04577) | ||||
| 460265.Mnod_3172 | (PF01609) | ||||
| 460265.Mnod_3170 | (PF13692) | ||||
| 460265.Mnod_2551 | (PF01609) | ||||
| 460265.Mnod_5245 | PF02371 | ||||
| 460265.Mnod_4269 | (PF01609) | ||||
| 460265.Mnod_0549 | + | ||||
| 460265.Mnod_2057 | (PF01609) | ||||
| 460265.Mnod_2054 | + | ||||
| 460265.Mnod_2530 | (PF01223) | ||||
| 460265.Mnod_6322 | (PF03050) | ||||
| 460265.Mnod_6325 | (PF05050) | ||||
| 460265.Mnod_6324 | (PF05050) | ||||
| 460265.Mnod_6329 | + | ||||
| 460265.Mnod_5003 | PF05598 | ||||
| 460265.Mnod_5009 | + | ||||
| 460265.Mnod_0788 | PF05598 | ||||
| 460265.Mnod_0560 | + | ||||
| 460265.Mnod_7516 | + | ||||
| 460265.Mnod_3011 | + | ||||
| 460265.Mnod_6173 | (PF03050) | ||||
| 460265.Mnod_3235 | (PF07976) | ||||
| 460265.Mnod_3231 | + | ||||
| 460265.Mnod_2265 | PF02371 | ||||
| 460265.Mnod_2489 | PF05063 | ||||
| 460265.Mnod_5064 | (PF01391) | ||||
| 460265.Mnod_4881 | (PF01391) | ||||
| 460265.Mnod_5289 | + | ||||
| 460265.Mnod_4086 | PF02357 | ||||
| 460265.Mnod_5939 | (PF09361) | ||||
| 460265.Mnod_5937 | (PF09361) | ||||
| 460265.Mnod_3057 | PF05598 | ||||
| 460265.Mnod_5272 | + | ||||
| 460265.Mnod_0240 | PF02371 | ||||
| 460265.Mnod_2244 | (PF03050) | ||||
| 460265.Mnod_0742 | PF02371 | ||||
| 460265.Mnod_6604 | (PF01442) | ||||
| 460265.Mnod_5383 | (PF09361) | ||||
| 460265.Mnod_6835 | (PF03050) | ||||
| 460265.Mnod_6837 | (PF13438) | ||||
| 460265.Mnod_6442 | PF05598 | ||||
| 460265.Mnod_7105 | (PF08417) | ||||
| 460265.Mnod_6855 | (PF13480) |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
- T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: NO (FDR = 12.5 %)
- Functional Type IV secretion system: YES (FDR = 7.2 %)
Estimated copy number = 0.0 (0/10 KEGG proteins)
- Functional Type VI secretion system: NO (FDR = 7.7 %)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
Estimated copy number = 0.0 (0/10 KEGG proteins)
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Contact
- +43 1 4277 76681
- +43 1 4277 876681
- contact.cube@univie.ac.at
