Metamenu

Effective results for Nitrosococcus halophilus Nc 4 (eggnog40)

Summary

Number of putative secreted proteins: 163
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 47 eukaryotic-like domains, contained in 163 proteins (31 high, 132 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
472759.Nhal_2755(PF12323) (PF07282)mitochondrial
472759.Nhal_3641(PF12323) (PF07282)mitochondrial; (mitochondrial)
472759.Nhal_1181(PF12323) (PF07282)mitochondrial
472759.Nhal_0629(PF12323) (PF07282)mitochondrial
472759.Nhal_1995(PF12323) (PF07282)mitochondrial
472759.Nhal_2882(PF12323) (PF07282)mitochondrial
472759.Nhal_0371(PF12323) (PF07282)mitochondrial; (mitochondrial)
472759.Nhal_0358(PF12323) (PF07282)mitochondrial; (mitochondrial)
472759.Nhal_0423(PF12323) (PF07282)mitochondrial; (mitochondrial)
472759.Nhal_2935(PF12323) (PF07282)mitochondrial
472759.Nhal_0671(PF07732)ER
472759.Nhal_1078(PF07732)(ER)
472759.Nhal_1691(PF07732)ER
472759.Nhal_0107(PF13436)ER
472759.Nhal_3229(PF16889)mitochondrial
472759.Nhal_2259PF06552(mitochondrial)
472759.Nhal_1324(PF00685)mitochondrial; (mitochondrial)
472759.Nhal_1325(PF00685)(mitochondrial)
472759.Nhal_2563(PF13281)ER
472759.Nhal_3948(PF00306) (PF02874) (PF00006)
472759.Nhal_0376(PF02516)mitochondrial; (mitochondrial)
472759.Nhal_3951(PF00137)(ER)
472759.Nhal_0780(PF00137)ER
472759.Nhal_2820(PF12323)mitochondrial; (mitochondrial)
472759.Nhal_2238(PF00137)ER
472759.Nhal_2236(PF00306) (PF02874) (PF00006)
472759.Nhal_0198PF00036ER
472759.Nhal_1905(PF00306) (PF02874) (PF00006)
472759.Nhal_2859PF07927(mitochondrial)
472759.Nhal_0430(PF12323) (PF07282)(mitochondrial)
472759.Nhal_0437(PF07732)(mitochondrial)
472759.Nhal_0400(PF16889)ER
472759.Nhal_2263PF07927mitochondrial; (mitochondrial)
472759.Nhal_3501(PF07732)ER
472759.Nhal_2006(PF10142)(mitochondrial)
472759.Nhal_1920PF00036ER
472759.Nhal_3299(PF14099)ER
472759.Nhal_3294(PF14099)mitochondrial; (mitochondrial)
472759.Nhal_2736(PF12323) (PF07282)
472759.Nhal_2250(PF12323)(mitochondrial); not used
472759.Nhal_1393(PF14279)(mitochondrial)
472759.Nhal_1082(PF07732)(ER)
472759.Nhal_3914PF07927(mitochondrial)
472759.Nhal_1076(PF12323) (PF07282)
472759.Nhal_0325(PF13444)(mitochondrial)
472759.Nhal_2502(PF12323) (PF07282)
472759.Nhal_2168(PF00685)(mitochondrial)
472759.Nhal_0010(PF07732)(ER)
472759.Nhal_2082(PF12323) (PF07282)
472759.Nhal_3946(PF00006) (PF02874)
472759.Nhal_0377(PF14279)(plastid)
472759.Nhal_3308(PF04307)(plastid)
472759.Nhal_1951(PF00006) (PF02874)
472759.Nhal_0783(PF00006) (PF02874)
472759.Nhal_2048PF07927(plastid)
472759.Nhal_1966(PF07282)(mitochondrial)
472759.Nhal_1156(PF07282)(mitochondrial)
472759.Nhal_3636PF07927(mitochondrial); not used
472759.Nhal_0756(PF14279)(mitochondrial)
472759.Nhal_2466(PF07282)(mitochondrial)
472759.Nhal_0747(PF07282)(mitochondrial)
472759.Nhal_0254(PF12323) (PF07282)
472759.Nhal_1115(PF05192)(ER)
472759.Nhal_0736(PF12323) (PF07282)
472759.Nhal_1600(PF07282)(mitochondrial)
472759.Nhal_3278(PF12323) (PF07282)
472759.Nhal_2242(PF00006) (PF02874)
472759.Nhal_2737PF03400
472759.Nhal_2348(PF00006)
472759.Nhal_1131PF03400
472759.Nhal_1625PF03400
472759.Nhal_1628PF03400
472759.Nhal_3258(PF13444)
472759.Nhal_3259(PF13444)
472759.Nhal_2828(PF00872)
472759.Nhal_2821(PF00872)
472759.Nhal_0914(PF14279)
472759.Nhal_0050(PF11969)
472759.Nhal_2281(PF02732)
472759.Nhal_1871(PF05192)
472759.Nhal_2520PF07927
472759.Nhal_1464(PF05491)
472759.Nhal_0110(PF04307)
472759.Nhal_0117PF07927
472759.Nhal_3230(PF13415)
472759.Nhal_1883(PF01951)
472759.Nhal_3730(PF00006)
472759.Nhal_0939(PF00872)
472759.Nhal_1079(PF07732)
472759.Nhal_2354PF03400
472759.Nhal_1527PF14817
472759.Nhal_1855(PF13565)
472759.Nhal_1060PF16575
472759.Nhal_0625PF07927
472759.Nhal_3031PF07927
472759.Nhal_2185(PF13565)
472759.Nhal_2180PF03400
472759.Nhal_0315(PF00872)
472759.Nhal_0311PF03400
472759.Nhal_1996(PF13565)
472759.Nhal_3592(PF04307)
472759.Nhal_0954(PF00872)
472759.Nhal_1330(PF00685)
472759.Nhal_0633(PF00872)
472759.Nhal_1544(PF00872)
472759.Nhal_1541(PF13565)
472759.Nhal_3918(PF13565)
472759.Nhal_1836(PF13565)
472759.Nhal_2898(PF06080)
472759.Nhal_3940(PF00862)
472759.Nhal_3947(PF00231)
472759.Nhal_3945(PF02823)
472759.Nhal_1046PF07927
472759.Nhal_2149PF04457
472759.Nhal_2148(PF05189)
472759.Nhal_1824(PF14279)
472759.Nhal_1950(PF02823)
472759.Nhal_1958(PF14792)
472759.Nhal_2953(PF01951)
472759.Nhal_3952(PF00119)
472759.Nhal_1147(PF00872)
472759.Nhal_0784(PF00006)
472759.Nhal_0782(PF01991)
472759.Nhal_1369(PF05192)
472759.Nhal_3319(PF00685)
472759.Nhal_0816(PF01764)
472759.Nhal_0962(PF14216)
472759.Nhal_2944(PF00872)
472759.Nhal_1363(PF07282)
472759.Nhal_1024(PF11523)
472759.Nhal_1028PF07927
472759.Nhal_1483(PF01764)
472759.Nhal_2239(PF00119)
472759.Nhal_3326(PF00685)
472759.Nhal_2235(PF00231)
472759.Nhal_3436(PF00101)
472759.Nhal_1800(PF14279)
472759.Nhal_0178(PF05491)
472759.Nhal_1489(PF00872)
472759.Nhal_2846(PF14701)
472759.Nhal_0427(PF00872)
472759.Nhal_3338PF03400
472759.Nhal_1908(PF00119)
472759.Nhal_1904(PF00231)
472759.Nhal_1907(PF00137)
472759.Nhal_1901(PF00872)
472759.Nhal_1757PF03400
472759.Nhal_1914PF07927
472759.Nhal_2911(PF01764)
472759.Nhal_0401(PF00872)
472759.Nhal_2260PF03400
472759.Nhal_1432PF01231
472759.Nhal_3198(PF13444)
472759.Nhal_3443(PF00101)
472759.Nhal_2903(PF14279)
472759.Nhal_3059(PF06080)
472759.Nhal_3297PF03400
472759.Nhal_1739PF03400
472759.Nhal_1937(PF13565)
472759.Nhal_0463(PF12899)
472759.Nhal_1706(PF14279)
472759.Nhal_2241(PF02823)
472759.Nhal_3460(PF04307)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================