Metamenu

Effective results for Veillonella parvula DSM 2008 (eggnog40)

Summary

Number of putative secreted proteins: 13
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 5 eukaryotic-like domains, contained in 13 proteins (0 high, 13 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
479436.Vpar_1018(PF01128)(mitochondrial); mitochondrial
479436.Vpar_0750(PF00939)ER
479436.Vpar_0979(PF13332)ER
479436.Vpar_0776(PF09511)mitochondrial
479436.Vpar_1443(PF00939)ER
479436.Vpar_0263(PF00939)ER
479436.Vpar_1402(PF00939)ER
479436.Vpar_1413(PF13332)(ER)
479436.Vpar_0675(PF01128)(mitochondrial)
479436.Vpar_0013(PF08123)
479436.Vpar_0030(PF01128)
479436.Vpar_1410(PF13332)
479436.Vpar_1170(PF00939)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================