Effective results for Anoxybacillus flavithermus WK1 (eggnog40)

Summary

Number of putative secreted proteins: 45
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 14 eukaryotic-like domains, contained in 45 proteins (12 high, 33 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
491915.Aflv_0252				(PF13592) PF13551	(mitochondrial)
491915.Aflv_2375				(PF13592) PF13551	(mitochondrial)
491915.Aflv_0154				(PF13592) PF13551	(mitochondrial)
491915.Aflv_0165				PF13551	(mitochondrial)
491915.Aflv_2268				(PF12323)	mitochondrial
491915.Aflv_1811				(PF12323)	mitochondrial
491915.Aflv_0655				(PF08761)	(mitochondrial)
491915.Aflv_2682				(PF12323)	mitochondrial
491915.Aflv_2777				(PF12323)	mitochondrial; (mitochondrial)
491915.Aflv_1769				(PF12323)	mitochondrial
491915.Aflv_2013				(PF12323)	(mitochondrial)
491915.Aflv_2124				(PF12323)	mitochondrial
491915.Aflv_0392				(PF12323)	mitochondrial
491915.Aflv_0713				(PF12323)	mitochondrial
491915.Aflv_2102				(PF03050)	(mitochondrial)
491915.Aflv_0219				(PF03050)	(mitochondrial)
491915.Aflv_1645				(PF13592) PF13551
491915.Aflv_0526				(PF08761)	(mitochondrial)
491915.Aflv_1427				(PF13592) PF13551
491915.Aflv_2062				(PF03050)	(mitochondrial)
491915.Aflv_2657				(PF05225)	(mitochondrial)
491915.Aflv_2619				(PF09752)	(mitochondrial)
491915.Aflv_2214				(PF13592) PF13551
491915.Aflv_1172				(PF03050)	(mitochondrial)
491915.Aflv_0157				(PF13592) PF13551
491915.Aflv_0400				(PF12606)	ER; not used
491915.Aflv_2483				(PF03050)
491915.Aflv_0980				(PF05495)
491915.Aflv_2454				(PF03050)
491915.Aflv_2455				(PF03050)
491915.Aflv_2457				(PF13592)
491915.Aflv_0993				(PF12323)
491915.Aflv_1652				(PF03050)
491915.Aflv_2210				(PF12323)
491915.Aflv_0253				(PF03050)
491915.Aflv_0266				PF07716
491915.Aflv_2513				PF00688
491915.Aflv_1221				(PF03050)
491915.Aflv_2373				(PF13592)
491915.Aflv_2576				(PF03161)
491915.Aflv_2380				(PF03050)
491915.Aflv_1551				PF06888
491915.Aflv_1170				PF13551
491915.Aflv_1627				(PF02171)
491915.Aflv_0159				(PF03050)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================