Metamenu

Effective results for Holdemanella biformis DSM 3989 (eggnog40)

Summary

Number of putative secreted proteins: 103
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 23 eukaryotic-like domains, contained in 103 proteins (4 high, 99 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
518637.EUBIFOR_00324(PF08282)(ER)
518637.EUBIFOR_02331(PF01554)ER
518637.EUBIFOR_00993(PF13127)(ER)
518637.EUBIFOR_01434(PF01554)ER
518637.EUBIFOR_00512PF05296ER
518637.EUBIFOR_01450(PF00344)(ER); ER
518637.EUBIFOR_01589(PF01554)ER
518637.EUBIFOR_01965(PF01554)mitochondrial; (mitochondrial)
518637.EUBIFOR_00811(PF05738)ER
518637.EUBIFOR_01033(PF00344)(mitochondrial)
518637.EUBIFOR_00158(PF05738)ER
518637.EUBIFOR_00157(PF05738)ER
518637.EUBIFOR_01602(PF13173)(mitochondrial)
518637.EUBIFOR_01730(PF05738)ER
518637.EUBIFOR_02383(PF08282)(ER)
518637.EUBIFOR_00949(PF01554)(mitochondrial)
518637.EUBIFOR_00492(PF01554)ER
518637.EUBIFOR_01544(PF13173)mitochondrial
518637.EUBIFOR_02087(PF05738)ER
518637.EUBIFOR_02502(PF01554)(mitochondrial)
518637.EUBIFOR_01518(PF13173)mitochondrial
518637.EUBIFOR_00842(PF05738)ER
518637.EUBIFOR_02345(PF04326)(mitochondrial)
518637.EUBIFOR_00079(PF01554)(ER)
518637.EUBIFOR_01784(PF01554)(ER)
518637.EUBIFOR_01234(PF08011) (PF09820)
518637.EUBIFOR_00518(PF08011) (PF09820)
518637.EUBIFOR_01355(PF08011) (PF09820)
518637.EUBIFOR_01970(PF02901)(mitochondrial)
518637.EUBIFOR_01484(PF08011) (PF09820)
518637.EUBIFOR_01966(PF01554)(ER)
518637.EUBIFOR_01380(PF08011) (PF09820)
518637.EUBIFOR_01031(PF01000) (PF01193)
518637.EUBIFOR_02424(PF01554)(ER)
518637.EUBIFOR_00130(PF11070)(mitochondrial); not used
518637.EUBIFOR_01531(PF01637)(plastid)
518637.EUBIFOR_00938(PF01000) (PF01193)not used
518637.EUBIFOR_00846(PF13155)(mitochondrial)
518637.EUBIFOR_01504(PF13173)(mitochondrial)
518637.EUBIFOR_00414(PF08011) (PF09820)
518637.EUBIFOR_00415(PF01554)(ER)
518637.EUBIFOR_02027PF13151
518637.EUBIFOR_00995(PF01554)
518637.EUBIFOR_00067(PF08282)
518637.EUBIFOR_00331(PF01554)
518637.EUBIFOR_02476(PF01554)
518637.EUBIFOR_02479(PF08282)
518637.EUBIFOR_00504(PF13173)
518637.EUBIFOR_00435(PF01554)
518637.EUBIFOR_00342(PF08282)
518637.EUBIFOR_01326(PF12437)
518637.EUBIFOR_01321(PF11074)
518637.EUBIFOR_01696(PF08282)
518637.EUBIFOR_01590(PF01554)
518637.EUBIFOR_00452(PF13173)
518637.EUBIFOR_01599(PF01554)
518637.EUBIFOR_01529(PF01637)
518637.EUBIFOR_02452(PF04326)
518637.EUBIFOR_02100(PF14311)
518637.EUBIFOR_01764(PF14622)
518637.EUBIFOR_01763(PF14622)
518637.EUBIFOR_01165(PF13155)
518637.EUBIFOR_02061(PF08282)
518637.EUBIFOR_01488(PF13173)
518637.EUBIFOR_01482(PF04326)
518637.EUBIFOR_01155(PF13173)
518637.EUBIFOR_00618(PF08282)
518637.EUBIFOR_00777PF13151
518637.EUBIFOR_00773(PF13155)
518637.EUBIFOR_02413(PF08282)
518637.EUBIFOR_00148(PF08282)
518637.EUBIFOR_02419(PF13173)
518637.EUBIFOR_01360(PF12437)
518637.EUBIFOR_01839(PF02901)
518637.EUBIFOR_01614(PF13155)
518637.EUBIFOR_02081(PF02901)
518637.EUBIFOR_01536(PF01554)
518637.EUBIFOR_01669(PF13173)
518637.EUBIFOR_01665(PF04326)
518637.EUBIFOR_01667(PF01554)
518637.EUBIFOR_02367(PF08282)
518637.EUBIFOR_02217(PF01554)
518637.EUBIFOR_00928(PF13173)
518637.EUBIFOR_00722(PF06250)
518637.EUBIFOR_00723(PF06250)
518637.EUBIFOR_00721(PF06250)
518637.EUBIFOR_01851(PF02901)
518637.EUBIFOR_01859(PF13173)
518637.EUBIFOR_00210(PF01637)
518637.EUBIFOR_02170(PF08282)
518637.EUBIFOR_02176PF13151
518637.EUBIFOR_00024(PF08282)
518637.EUBIFOR_00590(PF08282)
518637.EUBIFOR_00202(PF05738)
518637.EUBIFOR_01649(PF06250)
518637.EUBIFOR_02521(PF01633)
518637.EUBIFOR_00472(PF13173)
518637.EUBIFOR_02530(PF08282)
518637.EUBIFOR_00467(PF08282)
518637.EUBIFOR_01795(PF08282)
518637.EUBIFOR_00678(PF02901)
518637.EUBIFOR_00897(PF08282)
518637.EUBIFOR_00099(PF01633)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================