Effective results for Caldicellulosiruptor bescii DSM 6725 (eggnog40)

Summary

Number of putative secreted proteins: 23
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 23 proteins (2 high, 21 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
521460.Athe_0618(PF00331)ER
521460.Athe_0610(PF00686)ER
521460.Athe_0609(PF00686)ER
521460.Athe_2561(PF00415)(mitochondrial)
521460.Athe_0956(PF00415)ER
521460.Athe_1857(PF00331)ER
521460.Athe_0183(PF00331)ER
521460.Athe_0177(PF04893)mitochondrial; (mitochondrial)
521460.Athe_1938(PF16661)(plastid)
521460.Athe_2724(PF00331)
521460.Athe_0246PF14712
521460.Athe_2094(PF17132)
521460.Athe_2612(PF04893)
521460.Athe_2565(PF00415)
521460.Athe_2569(PF00415)
521460.Athe_2404PF11443
521460.Athe_0108(PF04893)
521460.Athe_1277(PF16661)
521460.Athe_1890(PF09419)
521460.Athe_0090(PF10462)
521460.Athe_2076(PF17132)
521460.Athe_0185(PF00331)
521460.Athe_2581(PF17132)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================