Metamenu

Effective results for Proteus mirabilis HI4320 (eggnog40)

Summary

Number of putative secreted proteins: 161
- Predicted by T4SEpre: 137
- Predicted by EffectiveELD: 8 eukaryotic-like domains, contained in 53 proteins (0 high, 53 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV), Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
529507.PMI1186+(PF00577)ER
529507.PMI1655+ER
529507.PMI2691+(mitochondrial)
529507.PMI0698+ER
529507.PMI2751+mitochondrial
529507.PMI2425+(ER)
529507.PMI2730(PF00577)ER
529507.PMI0250+(mitochondrial)
529507.PMI2988(PF12323)mitochondrial
529507.PMI3071+ER
529507.PMI3074(PF12323)(mitochondrial)
529507.PMI2213(PF00345)ER
529507.PMI2212(PF00577)ER
529507.PMI2217+ER
529507.PMI1187(PF00345)ER
529507.PMI1297+ER
529507.PMI0584+ER
529507.PMI2729(PF00345)ER
529507.PMI0760(PF12323)(mitochondrial)
529507.PMI1367+ER
529507.PMI3118+ER
529507.PMI2220(PF00345)ER
529507.PMI2221(PF00577)ER
529507.PMI2533(PF00577)ER
529507.PMI2534(PF00345)(ER); (mitochondrial)
529507.PMI2535(PF00345)ER
529507.PMI2538(PF00345)ER
529507.PMI1196(PF00345)ER
529507.PMI1195(PF00577)ER
529507.PMI1199+ER
529507.PMI1289+mitochondrial; ER
529507.PMI1285+(ER)
529507.PMI0300(PF00345)ER
529507.PMI3436(PF00345)ER
529507.PMI3543(PF12323)(mitochondrial)
529507.PMI1627+ER
529507.PMI2709(PF00102)mitochondrial
529507.PMI2154+ER
529507.PMI2407+ER
529507.PMI3602+ER
529507.PMI2955+ER
529507.PMI2178(PF12323)(mitochondrial)
529507.PMI2170+ER
529507.PMI3182+ER; (ER)
529507.PMI3632+(ER)
529507.PMI1873+(mitochondrial); mitochondrial
529507.PMI3382(PF12323)(mitochondrial)
529507.PMI3704+ER
529507.PMI3092+ER
529507.PMI1010+ER
529507.PMI3710(PF12323)(mitochondrial)
529507.PMI3086(PF00345)ER
529507.PMI0534(PF00577)(ER)
529507.PMI0535(PF00345)ER
529507.PMI1002(PF12323)(mitochondrial)
529507.PMI3412+ER
529507.PMI0266(PF00345)ER
529507.PMI0265(PF00577)(mitochondrial)
529507.PMI3506(PF12323)(mitochondrial)
529507.PMI1922+ER
529507.PMI2631+ER
529507.PMI2237+(ER)
529507.PMI1206+(ER)
529507.PMI2128(PF02884)ER
529507.PMI2127(PF02884)ER
529507.PMI1879(PF00345)ER
529507.PMI0255(PF00577)(mitochondrial)
529507.PMI3350(PF00345)ER
529507.PMI2338(PF12323)(mitochondrial)
529507.PMI2807+(mitochondrial); mitochondrial
529507.PMI1467(PF00345)ER
529507.PMI1466(PF00577)ER
529507.PMI3033(PF12323)(mitochondrial)
529507.PMI2499+ER
529507.PMI1417+ER
529507.PMI1785+ER
529507.PMI0303+ER
529507.PMI1098+ER
529507.PMI1063(PF00345)ER
529507.PMI1062(PF00577)ER
529507.PMI1061+ER
529507.PMI1246+ER
529507.PMI1563+(mitochondrial)
529507.PMI1441+ER
529507.PMI3307(PF12323)(mitochondrial)
529507.PMI1546+(ER)
529507.PMI3349(PF00577)(mitochondrial)
529507.PMI1878(PF00577)(mitochondrial)
529507.PMI3278+(mitochondrial)
529507.PMI1433+
529507.PMI1561+
529507.PMI0100+
529507.PMI3481+
529507.PMI3458+
529507.PMI2501(PF12323)
529507.PMI1296+
529507.PMI1368+
529507.PMI3063+
529507.PMI2402+
529507.PMI2714+
529507.PMI1179+
529507.PMI1174+
529507.PMI3122(PF03945)
529507.PMI3437(PF00577)
529507.PMI1621+
529507.PMI2144+
529507.PMI0967+
529507.PMI0966+
529507.PMI0140+
529507.PMI3462+
529507.PMI1971+
529507.PMI0951+
529507.PMI0953+
529507.PMI3215+
529507.PMI3635+
529507.PMI3096+
529507.PMI1993+
529507.PMI1015+
529507.PMI1121+
529507.PMI3407+
529507.PMI2289+
529507.PMI0285(PF00413)
529507.PMI0281(PF00413)
529507.PMI0998+
529507.PMI2628+
529507.PMI2298+
529507.PMI0299(PF00577)
529507.PMI0852+
529507.PMI0677+
529507.PMI0279(PF00413)
529507.PMI3372+
529507.PMI3378+
529507.PMI2918+
529507.PMI1405+
529507.PMI2139+
529507.PMI1734+
529507.PMI2133+
529507.PMI0080+
529507.PMI0828+
529507.PMI2522+
529507.PMI0252+
529507.PMI1043+
529507.PMI0400+
529507.PMI0316+
529507.PMI0138+
529507.PMI3037+
529507.PMI2252+
529507.PMI2477+
529507.PMI0662+
529507.PMI1256+
529507.PMI1522+
529507.PMI0148+
529507.PMI1991+
529507.PMI3330+
529507.PMI3334+
529507.PMI1669+
529507.PMI2684(PF07720)
529507.PMI1242+
529507.PMI0758+
529507.PMI0113+
529507.PMI3016+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.1 (1/10 KEGG proteins)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 1.125 (9/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================