Effective results for Helicobacter canadensis MIT 98-5491 (eggnog40)

Summary

Number of putative secreted proteins: 362
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 149 eukaryotic-like domains, contained in 362 proteins (42 high, 320 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
537970.HCMG_00927(PF04561) (PF04983) (PF04565) (PF10385) (PF04998) (PF04997) (PF00623) (PF00562) (PF04563) (PF05000) (PF04560)(mitochondrial)
537970.HCAN_0216(PF04561) (PF04983) (PF04565) (PF10385) (PF04998) (PF04997) (PF00623) (PF00562) (PF04563) (PF05000) (PF04560)(mitochondrial)
537970.HCMG_00251(PF03947) (PF00181)mitochondrial
537970.HCAN_0575(PF03947) (PF00181)mitochondrial
537970.HCAN_0588PF00861(mitochondrial)
537970.HCMG_00608PF02516ER
537970.HCMG_00267(PF00344)ER
537970.HCMG_00264PF00861(mitochondrial)
537970.HCMG_00861(PF14743)ER
537970.HCAN_1176(PF14743)ER
537970.HCAN_1081(PF03054)ER
537970.HCAN_0116(PF00551)(mitochondrial); mitochondrial
537970.HCMG_00255PF00252(mitochondrial)
537970.HCMG_00254PF00189 (PF07650)(mitochondrial)
537970.HCMG_00253(PF00237)mitochondrial
537970.HCMG_00252(PF00203)(mitochondrial)
537970.HCMG_01035(PF00551)(mitochondrial); mitochondrial
537970.HCMG_00930PF00687mitochondrial; (mitochondrial)
537970.HCAN_0486(PF10431)(mitochondrial)
537970.HCAN_0868(PF00430)ER
537970.HCAN_0869(PF00430)ER
537970.HCAN_0864(PF00551)(ER)
537970.HCAN_0729PF02516ER
537970.HCAN_0277(PF06965)ER
537970.HCAN_0205(PF00013)ER; (ER)
537970.HCAN_0665(PF00551)(mitochondrial)
537970.HCAN_0514(PF00453)mitochondrial; (mitochondrial)
537970.HCAN_0515(PF01632)(mitochondrial)
537970.HCMG_00217(PF00398)(ER)
537970.HCMG_01616(PF06965)ER
537970.HCAN_0213PF00687mitochondrial; (mitochondrial)
537970.HCAN_0930PF02516ER
537970.HCMG_00761(PF03054)ER
537970.HCMG_00160(PF10431)(mitochondrial)
537970.HCMG_01317(PF02348)mitochondrial
537970.HCMG_00952(PF00551)(mitochondrial)
537970.HCAN_0084(PF03840)ER
537970.HCAN_0421(PF13664)ER
537970.HCMG_00547(PF00430)ER
537970.HCMG_00546(PF00430)ER
537970.HCMG_00091(PF13664)ER
537970.HCMG_00324(PF06325)(mitochondrial)
537970.HCAN_1461(PF08840)ER
537970.HCMG_01067(PF03840)ER
537970.HCAN_1287(PF02348)mitochondrial
537970.HCAN_0576(PF00203)(mitochondrial)
537970.HCAN_0577(PF00237)mitochondrial
537970.HCAN_0578PF00189 (PF07650)(mitochondrial)
537970.HCAN_0579PF00252(mitochondrial)
537970.HCMG_00189(PF01632)(mitochondrial)
537970.HCMG_00188(PF00453)mitochondrial; (mitochondrial)
537970.HCMG_00342(PF00551)(mitochondrial)
537970.HCAN_0591(PF00344)ER
537970.HCAN_0596PF00411(mitochondrial)
537970.HCAN_0597(PF00163)(mitochondrial)
537970.HCMG_00271PF00411(mitochondrial)
537970.HCMG_00272(PF00163)(mitochondrial)
537970.HCMG_01471(PF00886)mitochondrial
537970.HCAN_1438(PF00886)mitochondrial
537970.HCMG_01496(PF08840)ER
537970.HCAN_0647(PF06325)(mitochondrial)
537970.HCAN_0610(PF02527)(plastid)
537970.HCAN_0617(PF03484) (PF03147)
537970.HCAN_0616(PF01409) (PF02912)
537970.HCAN_0905(PF05496) (PF05491)
537970.HCAN_0589PF03719 PF00333
537970.HCAN_0584PF00673 PF00281
537970.HCMG_00285(PF02527)(plastid)
537970.HCMG_00260PF00673 PF00281
537970.HCMG_00265PF03719 PF00333
537970.HCMG_00461(PF03948) (PF01281)
537970.HCAN_1173(PF02769) (PF00586)
537970.HCAN_0750(PF00013) (PF03726)
537970.HCMG_00933(PF00584)(mitochondrial); not used
537970.HCMG_00931(PF00298) (PF03946)
537970.HCMG_00748(PF02769) (PF00586)
537970.HCAN_0783(PF03948) (PF01281)
537970.HCAN_0657(PF00733) (PF13537)
537970.HCAN_0654(PF00733) (PF13537)
537970.HCAN_1334(PF02769) (PF00586)
537970.HCAN_0643(PF00551)(mitochondrial)
537970.HCAN_0204(PF01041)(mitochondrial)
537970.HCAN_0662(PF00733) (PF13537)
537970.HCMG_00583(PF05496) (PF05491)
537970.HCMG_01349(PF02769) (PF00586)
537970.HCAN_0477(PF04305)(ER)
537970.HCMG_00339(PF00733) (PF13537)
537970.HCAN_0212(PF00298) (PF03946)
537970.HCAN_0210(PF00584)(mitochondrial); not used
537970.HCAN_1317(PF02769) (PF00586)
537970.HCMG_00940(PF01041)(mitochondrial)
537970.HCMG_00319(PF00551)(mitochondrial)
537970.HCMG_00408(PF00733) (PF13537)
537970.HCMG_00797(PF06071)(plastid)
537970.HCAN_1067(PF02769) (PF00586)
537970.HCAN_1114(PF06071)(plastid)
537970.HCAN_0730(PF00733) (PF13537)
537970.HCMG_00334(PF00733) (PF13537)
537970.HCMG_00331(PF00733) (PF13537)
537970.HCMG_00428(PF00013) (PF03726)
537970.HCAN_0158(PF03102)(mitochondrial)
537970.HCMG_00987(PF03102)(mitochondrial)
537970.HCMG_00985(PF02348)(mitochondrial)
537970.HCMG_00858(PF02769) (PF00586)
537970.HCAN_0598(PF01000) (PF01193)
537970.HCAN_0599(PF01196)(mitochondrial)
537970.HCAN_0595PF00416(mitochondrial)
537970.HCMG_00292(PF03484) (PF03147)
537970.HCMG_00291(PF01409) (PF02912)
537970.HCMG_00270PF00416(mitochondrial)
537970.HCMG_00273(PF01000) (PF01193)
537970.HCMG_00274(PF01196)(mitochondrial)
537970.HCMG_01470(PF00448) (PF02978)
537970.HCAN_1437(PF00448) (PF02978)
537970.HCAN_0160(PF02348)(mitochondrial)
537970.HCAN_0761(PF13393)
537970.HCAN_0298(PF13541)
537970.HCAN_0907(PF02938)
537970.HCAN_0583(PF17136)
537970.HCAN_0582PF00238
537970.HCAN_0581PF00366
537970.HCAN_0580(PF00831)
537970.HCAN_0587PF00347
537970.HCAN_0586PF00410
537970.HCAN_0831(PF01668)
537970.HCMG_00262PF00410
537970.HCMG_00263PF00347
537970.HCMG_00266PF00828
537970.HCMG_00464(PF07650)
537970.HCMG_00463(PF10431)
537970.HCMG_00468(PF01171)
537970.HCMG_01245(PF08459)
537970.HCMG_01021(PF13507)
537970.HCAN_1554(PF02677)
537970.HCAN_1429(PF10431)
537970.HCMG_00869(PF02130)
537970.HCMG_00863(PF04305)
537970.HCMG_00864(PF06965)not used
537970.HCMG_00865(PF03102)
537970.HCMG_00439(PF13393)
537970.HCAN_1391(PF13537)
537970.HCAN_1178(PF04305)
537970.HCAN_1085(PF14622)
537970.HCAN_0843(PF13177)
537970.HCAN_0338(PF02348)
537970.HCAN_0337(PF01041)
537970.HCAN_0029(PF01250)
537970.HCAN_0242(PF10431)
537970.HCMG_00257PF00366
537970.HCMG_00256(PF00831)
537970.HCMG_00250PF00276
537970.HCMG_01386(PF13541)
537970.HCMG_01387(PF00448)
537970.HCMG_00259(PF17136)
537970.HCMG_01257(PF05066)
537970.HCMG_00388(PF10576)
537970.HCMG_00816(PF00398)
537970.HCMG_00925(PF00164)
537970.HCMG_00924PF00177
537970.HCMG_00929(PF00466)
537970.HCMG_00928(PF16320)
537970.HCAN_1348(PF00448)
537970.HCAN_1349(PF10609)
537970.HCAN_1354(PF13541)
537970.HCAN_0101(PF01501)
537970.HCAN_0322(PF04127)
537970.HCAN_0035(PF05496)
537970.HCAN_0259(PF01041)
537970.HCMG_00664(PF10576)
537970.HCMG_00248PF00297
537970.HCMG_00249(PF00573)
537970.HCMG_00247PF00338
537970.HCMG_01624(PF00709)
537970.HCMG_00807(PF02410)
537970.HCMG_00935(PF03143)
537970.HCMG_00939(PF00013)
537970.HCAN_1355(PF00448)
537970.HCAN_0790(PF01171)
537970.HCAN_0264(PF00162)
537970.HCAN_0860(PF00829)
537970.HCAN_0861(PF01016)
537970.HCAN_0862(PF01018)
537970.HCMG_00659(PF14602)
537970.HCMG_00721(PF01687)
537970.HCMG_01528(PF01106)
537970.HCMG_00345(PF01041)
537970.HCMG_01521(PF02576)
537970.HCAN_1219(PF08459)
537970.HCAN_1506(PF01041)
537970.HCAN_1507(PF14602)
537970.HCMG_00900(PF10431)
537970.HCAN_1329(PF03143)
537970.HCAN_1325(PF03462)
537970.HCMG_00210(PF01649)
537970.HCMG_01619(PF00709)
537970.HCMG_00743(PF01195)
537970.HCMG_00123(PF02873)
537970.HCAN_0127(PF13507)
537970.HCAN_0498(PF13184)
537970.HCAN_0092(PF06325)
537970.HCAN_0013(PF00709)
537970.HCAN_0012(PF13393)
537970.HCAN_0785(PF10431)
537970.HCAN_0786(PF07650)
537970.HCAN_0270(PF02130)
537970.HCAN_0276(PF03102)
537970.HCMG_00004(PF01041)
537970.HCMG_00005(PF02348)
537970.HCMG_01357(PF03462)
537970.HCMG_01519(PF11987)
537970.HCMG_01192(PF01171)
537970.HCAN_1201(PF06414)
537970.HCAN_1518(PF01171)
537970.HCAN_1022(PF00551)
537970.HCAN_1020(PF06421)
537970.HCAN_0642(PF01041)
537970.HCAN_0209(PF03143)
537970.HCAN_0200(PF00551)
537970.HCAN_0201(PF14602)
537970.HCAN_0668(PF01041)
537970.HCAN_0666(PF14602)
537970.HCAN_0688(PF01937)
537970.HCMG_00030(PF01121)
537970.HCMG_00585(PF02938)
537970.HCMG_00211(PF03462)
537970.HCMG_00366(PF01937)
537970.HCMG_01509(PF03054)
537970.HCMG_00699(PF06421)
537970.HCMG_00880(PF01041)
537970.HCAN_0473(PF00889)
537970.HCAN_0474(PF00318)
537970.HCAN_0218PF00177
537970.HCAN_0217(PF00164)
537970.HCAN_0215(PF16320)
537970.HCAN_0214(PF00466)
537970.HCMG_00023(PF01192)
537970.HCMG_00594(PF06418)
537970.HCMG_00593(PF00551)
537970.HCMG_00200(PF14714)
537970.HCMG_00750(PF01501)
537970.HCMG_00343(PF14602)
537970.HCMG_01520(PF02033)
537970.HCMG_01159(PF02677)
537970.HCMG_00972(PF14602)
537970.HCAN_1229(PF00958)
537970.HCAN_1228(PF05066)
537970.HCAN_0195(PF01501)
537970.HCAN_0192(PF00551)
537970.HCAN_0534(PF01649)
537970.HCAN_0535(PF03462)
537970.HCMG_00560(PF01142)
537970.HCMG_00765(PF14622)
537970.HCMG_01561(PF05697)
537970.HCMG_01361(PF03143)
537970.HCMG_01364(PF02769)
537970.HCMG_00943(PF14602)
537970.HCMG_00944(PF00551)
537970.HCMG_00418(PF12344)
537970.HCMG_00949(PF01501)
537970.HCMG_01143(PF13393)
537970.HCMG_01416(PF01795)
537970.HCAN_1491(PF01106)
537970.HCAN_0186PF00312
537970.HCMG_00701(PF00551)
537970.HCMG_00258PF00238
537970.HCAN_0452(PF02873)
537970.HCAN_0526(PF14714)
537970.HCAN_0986(PF10576)
537970.HCAN_0980(PF14602)
537970.HCMG_01258(PF00958)
537970.HCMG_00172(PF13184)
537970.HCMG_00318(PF01041)
537970.HCMG_01557(PF13541)
537970.HCMG_01315(PF01106)
537970.HCMG_00407PF02516
537970.HCMG_00405PF00572
537970.HCMG_00958PF00312
537970.HCMG_01421(PF10431)
537970.HCAN_1485(PF02576)
537970.HCAN_1484(PF02033)
537970.HCAN_1483(PF11987)
537970.HCMG_01425(PF13537)
537970.HCAN_1069(PF01501)
537970.HCAN_1062(PF01195)
537970.HCAN_0083(PF01765)
537970.HCAN_0427(PF03652)
537970.HCAN_0882(PF01142)
537970.HCMG_00098(PF03652)
537970.HCMG_00542(PF00551)
537970.HCMG_00540(PF01018)
537970.HCMG_00148(PF00318)
537970.HCMG_00147(PF00889)
537970.HCMG_01230(PF06414)
537970.HCMG_01307(PF02403)
537970.HCMG_01126(PF01250)
537970.HCMG_01120(PF05496)
537970.HCAN_1474(PF03054)
537970.HCMG_01050(PF01501)
537970.HCMG_01059(PF06325)
537970.HCAN_1278(PF02403)
537970.HCAN_1290(PF14602)
537970.HCMG_01379(PF00448)
537970.HCAN_1124(PF02410)
537970.HCAN_0516(PF00707)
537970.HCAN_0728PF00572
537970.HCAN_0438(PF01715)
537970.HCAN_0540(PF00398)
537970.HCAN_0944(PF06965)
537970.HCAN_0949(PF13603)
537970.HCMG_00151(PF04305)
537970.HCMG_01206(PF01041)
537970.HCMG_00424(PF02843)
537970.HCMG_01068(PF01765)
537970.HCAN_1285(PF01106)
537970.HCAN_1041(PF01687)
537970.HCAN_0302(PF05697)
537970.HCAN_1132(PF00398)
537970.HCAN_0711(PF10576)
537970.HCMG_00521(PF13177)
537970.HCAN_0572PF00297
537970.HCAN_0573(PF00573)
537970.HCAN_0571PF00338
537970.HCAN_0574PF00276
537970.HCMG_01320(PF14602)
537970.HCMG_00982(PF01041)
537970.HCMG_01584(PF04127)
537970.HCAN_0388(PF13177)
537970.HCAN_0387(PF02367)
537970.HCAN_0362(PF01121)
537970.HCMG_00538(PF00829)
537970.HCMG_00539(PF01016)
537970.HCMG_00628(PF13603)
537970.HCAN_0746(PF02843)
537970.HCMG_00190(PF00707)
537970.HCMG_00623(PF06965)
537970.HCAN_0740(PF12344)
537970.HCMG_01462(PF10431)
537970.HCAN_1441(PF01746)
537970.HCAN_1440(PF01782)
537970.HCAN_1442(PF01245)
537970.HCMG_00842(PF00586)
537970.HCMG_00841(PF10609)
537970.HCAN_1158(PF00586)
537970.HCAN_1157(PF10609)
537970.HCAN_0172(PF14602)
537970.HCAN_0355(PF01192)
537970.HCAN_0915(PF00551)
537970.HCAN_0916(PF06418)
537970.HCMG_00509(PF01668)
537970.HCMG_00055(PF02367)
537970.HCMG_00506(PF01509)
537970.HCMG_00056(PF13177)
537970.HCAN_0590PF00828
537970.HCAN_0828(PF01509)
537970.HCMG_00109(PF01715)
537970.HCMG_01474(PF01746)
537970.HCMG_01475(PF01245)
537970.HCMG_01473(PF01782)
537970.HCMG_00875(PF00162)
537970.HCAN_1382(PF01795)
537970.HCAN_1387(PF10431)
537970.HCAN_0163(PF01041)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 1.25 (10/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================