Effective results for Desulfonatronospira thiodismutans ASO3-1 (eggnog40)
Summary
Number of putative secreted proteins: 207
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 37 eukaryotic-like domains, contained in 207 proteins (52 high, 155 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
| Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
|---|---|---|---|---|---|
| 555779.Dthio_PD1070 | (PF01627) (PF08448) | ER | |||
| 555779.Dthio_PD0610 | (PF01627) (PF08448) | ER; (ER) | |||
| 555779.Dthio_PD0972 | (PF13188) (PF08448) | mitochondrial | |||
| 555779.Dthio_PD2132 | (PF04998) (PF04565) (PF00623) (PF00562) | ||||
| 555779.Dthio_PD1857 | (PF01627) (PF08448) | ER | |||
| 555779.Dthio_PD1635 | (PF01627) (PF08448) | ER | |||
| 555779.Dthio_PD3179 | (PF01627) (PF08448) | ER | |||
| 555779.Dthio_PD3160 | (PF00589) PF02899 | (ER) | |||
| 555779.Dthio_PD1402 | (PF08448) | mitochondrial | |||
| 555779.Dthio_PD3646 | (PF00589) | (mitochondrial) | |||
| 555779.Dthio_PD2301 | (PF00438) (PF02773) (PF02772) | ||||
| 555779.Dthio_PD3499 | PF11074 | (mitochondrial) | |||
| 555779.Dthio_PD0475 | (PF01936) | (mitochondrial) | |||
| 555779.Dthio_PD1355 | (PF03567) | mitochondrial | |||
| 555779.Dthio_PD0639 | (PF00438) (PF02773) (PF02772) | ||||
| 555779.Dthio_PD1699 | PF13173 | (mitochondrial) | |||
| 555779.Dthio_PD3195 | PF13173 | mitochondrial | |||
| 555779.Dthio_PD1576 | (PF03567) | mitochondrial | |||
| 555779.Dthio_PD1575 | (PF03567) | (mitochondrial); (plastid) | |||
| 555779.Dthio_PD2053 | (PF00438) (PF02773) (PF02772) | ||||
| 555779.Dthio_PD2727 | (PF02958) | (ER) | |||
| 555779.Dthio_PD0102 | PF13173 | (ER) | |||
| 555779.Dthio_PD1361 | (PF03567) | (mitochondrial) | |||
| 555779.Dthio_PD2926 | (PF08448) | ER | |||
| 555779.Dthio_PD3543 | PF11074 | (mitochondrial) | |||
| 555779.Dthio_PD1169 | PF13173 | mitochondrial | |||
| 555779.Dthio_PD1549 | (PF01936) | (mitochondrial) | |||
| 555779.Dthio_PD3346 | (PF01627) | (mitochondrial) | |||
| 555779.Dthio_PD1021 | (PF13187) | (mitochondrial) | |||
| 555779.Dthio_PD1527 | (PF01936) | (mitochondrial) | |||
| 555779.Dthio_PD1990 | (PF10143) | ER | |||
| 555779.Dthio_PD3824 | PF13173 | (mitochondrial) | |||
| 555779.Dthio_PD1465 | (PF13188) | ER | |||
| 555779.Dthio_PD1688 | (PF07927) | (mitochondrial) | |||
| 555779.Dthio_PD3349 | PF13173 | ER | |||
| 555779.Dthio_PD2582 | PF13173 | mitochondrial; (mitochondrial) | |||
| 555779.Dthio_PD1058 | (PF13188) | (mitochondrial) | |||
| 555779.Dthio_PD2974 | (PF08448) | ER | |||
| 555779.Dthio_PD2991 | (PF01936) | mitochondrial; (mitochondrial) | |||
| 555779.Dthio_PD0042 | (PF00589) PF02899 | ||||
| 555779.Dthio_PD3807 | (PF13188) (PF08448) | ||||
| 555779.Dthio_PD3802 | (PF13188) (PF01627) | ||||
| 555779.Dthio_PD0453 | (PF00589) PF02899 | ||||
| 555779.Dthio_PD0452 | PF01807 | (mitochondrial) | |||
| 555779.Dthio_PD0455 | (PF00589) PF02899 | ||||
| 555779.Dthio_PD1073 | (PF01627) (PF08448) | ||||
| 555779.Dthio_PD2203 | (PF01695) | (mitochondrial) | |||
| 555779.Dthio_PD0472 | (PF07927) | (mitochondrial) | |||
| 555779.Dthio_PD0484 | PF01807 | (mitochondrial) | |||
| 555779.Dthio_PD3063 | (PF03266) | (mitochondrial) | |||
| 555779.Dthio_PD0080 | (PF00589) PF02899 | ||||
| 555779.Dthio_PD0083 | PF01807 | (mitochondrial) | |||
| 555779.Dthio_PD3472 | (PF01627) (PF08448) | ||||
| 555779.Dthio_PD3196 | (PF07927) | (mitochondrial) | |||
| 555779.Dthio_PD0333 | (PF04998) (PF00623) | ||||
| 555779.Dthio_PD0334 | (PF04565) (PF00562) | ||||
| 555779.Dthio_PD1375 | (PF13188) (PF08448) | ||||
| 555779.Dthio_PD0091 | PF01807 | (mitochondrial) | |||
| 555779.Dthio_PD0090 | (PF00589) PF02899 | ||||
| 555779.Dthio_PD2278 | (PF13188) (PF08448) | ||||
| 555779.Dthio_PD0982 | (PF13188) (PF08448) | ||||
| 555779.Dthio_PD3010 | (PF00589) PF02899 | ||||
| 555779.Dthio_PD0291 | (PF01627) (PF08448) | ||||
| 555779.Dthio_PD2859 | PF13173 | (mitochondrial) | |||
| 555779.Dthio_PD2143 | (PF01695) | (mitochondrial) | |||
| 555779.Dthio_PD0165 | (PF01695) | (mitochondrial) | |||
| 555779.Dthio_PD1547 | (PF01695) | (mitochondrial) | |||
| 555779.Dthio_PD0178 | (PF07927) | (mitochondrial) | |||
| 555779.Dthio_PD3576 | (PF08448) | (ER) | |||
| 555779.Dthio_PD0002 | PF01807 | (mitochondrial) | |||
| 555779.Dthio_PD1537 | PF01807 | (mitochondrial) | |||
| 555779.Dthio_PD1536 | (PF00589) PF02899 | ||||
| 555779.Dthio_PD1534 | (PF00589) PF02899 | ||||
| 555779.Dthio_PD1530 | (PF07927) | (mitochondrial) | |||
| 555779.Dthio_PD2895 | (PF00589) PF02899 | ||||
| 555779.Dthio_PD2898 | (PF01627) (PF08448) | ||||
| 555779.Dthio_PD1858 | (PF13188) (PF01627) | ||||
| 555779.Dthio_PD3368 | PF13173 | (mitochondrial) | |||
| 555779.Dthio_PD3355 | (PF01627) (PF08448) | ||||
| 555779.Dthio_PD0485 | (PF00589) PF02899 | ||||
| 555779.Dthio_PD0487 | (PF00589) PF02899 | ||||
| 555779.Dthio_PD0557 | (PF00589) PF02899 | ||||
| 555779.Dthio_PD2745 | (PF13188) (PF08448) | ||||
| 555779.Dthio_PD3021 | (PF13187) | ||||
| 555779.Dthio_PD1887 | (PF03050) | ||||
| 555779.Dthio_PD0132 | (PF08843) | ||||
| 555779.Dthio_PD0041 | (PF00589) | ||||
| 555779.Dthio_PD1067 | (PF01627) | ||||
| 555779.Dthio_PD1664 | (PF01627) | ||||
| 555779.Dthio_PD3803 | (PF08448) | ||||
| 555779.Dthio_PD2509 | (PF01627) | ||||
| 555779.Dthio_PD1081 | (PF01627) | ||||
| 555779.Dthio_PD0010 | (PF00589) | ||||
| 555779.Dthio_PD3748 | (PF08448) | ||||
| 555779.Dthio_PD0454 | (PF00589) | ||||
| 555779.Dthio_PD0699 | PF13173 | ||||
| 555779.Dthio_PD0073 | (PF00589) | ||||
| 555779.Dthio_PD1072 | (PF08448) | ||||
| 555779.Dthio_PD1418 | (PF00589) | ||||
| 555779.Dthio_PD1099 | (PF10609) | ||||
| 555779.Dthio_PD0847 | (PF03050) | ||||
| 555779.Dthio_PD2684 | (PF03050) | ||||
| 555779.Dthio_PD2832 | (PF08843) | ||||
| 555779.Dthio_PD3000 | (PF03050) | ||||
| 555779.Dthio_PD0689 | (PF13188) | ||||
| 555779.Dthio_PD3796 | (PF08843) | ||||
| 555779.Dthio_PD0065 | (PF01695) | ||||
| 555779.Dthio_PD0060 | (PF00589) | ||||
| 555779.Dthio_PD0896 | (PF16983) | ||||
| 555779.Dthio_PD3277 | (PF02958) | ||||
| 555779.Dthio_PD3785 | (PF08448) | ||||
| 555779.Dthio_PD0650 | PF13173 | ||||
| 555779.Dthio_PD0486 | (PF00589) | ||||
| 555779.Dthio_PD2823 | (PF10609) | ||||
| 555779.Dthio_PD2647 | (PF03050) | ||||
| 555779.Dthio_PD0463 | (PF01695) | ||||
| 555779.Dthio_PD0088 | PF02899 | ||||
| 555779.Dthio_PD0089 | (PF00589) | ||||
| 555779.Dthio_PD0081 | (PF00589) | ||||
| 555779.Dthio_PD0082 | (PF00589) | ||||
| 555779.Dthio_PD3684 | (PF08843) | ||||
| 555779.Dthio_PD1132 | (PF08448) | ||||
| 555779.Dthio_PD2674 | PF13173 | ||||
| 555779.Dthio_PD2671 | (PF01946) | ||||
| 555779.Dthio_PD3712 | (PF03050) | ||||
| 555779.Dthio_PD3215 | (PF02943) | ||||
| 555779.Dthio_PD0741 | (PF03050) | ||||
| 555779.Dthio_PD3441 | (PF00862) | ||||
| 555779.Dthio_PD0534 | PF13173 | ||||
| 555779.Dthio_PD3533 | (PF01695) | ||||
| 555779.Dthio_PD1759 | (PF07927) | ||||
| 555779.Dthio_PD1751 | (PF03050) | ||||
| 555779.Dthio_PD0751 | PF02899 | ||||
| 555779.Dthio_PD1117 | (PF13187) | ||||
| 555779.Dthio_PD1577 | (PF03567) | ||||
| 555779.Dthio_PD0988 | (PF01627) | ||||
| 555779.Dthio_PD2581 | PF13173 | ||||
| 555779.Dthio_PD2580 | PF13173 | ||||
| 555779.Dthio_PD2059 | (PF08448) | ||||
| 555779.Dthio_PD0969 | (PF08448) | ||||
| 555779.Dthio_PD2123 | PF13173 | ||||
| 555779.Dthio_PD1963 | (PF01946) | ||||
| 555779.Dthio_PD3234 | (PF13187) | ||||
| 555779.Dthio_PD3233 | (PF13187) | ||||
| 555779.Dthio_PD3231 | (PF13187) | ||||
| 555779.Dthio_PD0436 | PF13173 | ||||
| 555779.Dthio_PD0184 | (PF07927) | ||||
| 555779.Dthio_PD0343 | (PF10609) | ||||
| 555779.Dthio_PD0767 | PF13173 | ||||
| 555779.Dthio_PD0768 | PF13173 | ||||
| 555779.Dthio_PD1107 | (PF01627) | ||||
| 555779.Dthio_PD0293 | (PF13188) | ||||
| 555779.Dthio_PD2862 | (PF08843) | ||||
| 555779.Dthio_PD2601 | (PF00589) | ||||
| 555779.Dthio_PD0991 | (PF03059) | ||||
| 555779.Dthio_PD2596 | (PF00589) | ||||
| 555779.Dthio_PD2590 | (PF03050) | ||||
| 555779.Dthio_PD0971 | (PF08448) | ||||
| 555779.Dthio_PD0977 | (PF08448) | ||||
| 555779.Dthio_PD0978 | (PF08448) | ||||
| 555779.Dthio_PD1482 | (PF07927) | ||||
| 555779.Dthio_PD2630 | (PF08448) | ||||
| 555779.Dthio_PD3431 | PF01591 | ||||
| 555779.Dthio_PD3723 | PF13173 | ||||
| 555779.Dthio_PD1835 | (PF13246) | ||||
| 555779.Dthio_PD1497 | (PF01695) | ||||
| 555779.Dthio_PD2938 | PF13173 | ||||
| 555779.Dthio_PD3715 | PF13173 | ||||
| 555779.Dthio_PD0621 | (PF08448) | ||||
| 555779.Dthio_PD0378 | (PF08448) | ||||
| 555779.Dthio_PD1628 | (PF13188) | ||||
| 555779.Dthio_PD1622 | (PF13187) | ||||
| 555779.Dthio_PD0001 | PF02899 | ||||
| 555779.Dthio_PD1535 | (PF00589) | ||||
| 555779.Dthio_PD0394 | (PF02026) | ||||
| 555779.Dthio_PD2896 | (PF08448) | ||||
| 555779.Dthio_PD2890 | PF14853 | ||||
| 555779.Dthio_PD2363 | (PF08448) | ||||
| 555779.Dthio_PD3704 | (PF03050) | ||||
| 555779.Dthio_PD0494 | (PF00589) | ||||
| 555779.Dthio_PD0493 | (PF00589) | ||||
| 555779.Dthio_PD0490 | (PF00589) | ||||
| 555779.Dthio_PD0544 | (PF01627) | ||||
| 555779.Dthio_PD0035 | (PF01936) | ||||
| 555779.Dthio_PD0031 | (PF00589) | ||||
| 555779.Dthio_PD1521 | PF00362 | ||||
| 555779.Dthio_PD2428 | PF01807 | ||||
| 555779.Dthio_PD2084 | (PF01695) | ||||
| 555779.Dthio_PD1602 | (PF13246) | ||||
| 555779.Dthio_PD1738 | (PF03050) | ||||
| 555779.Dthio_PD0022 | (PF03050) | ||||
| 555779.Dthio_PD0027 | (PF03050) | ||||
| 555779.Dthio_PD1466 | (PF13911) | ||||
| 555779.Dthio_PD2989 | (PF00589) | ||||
| 555779.Dthio_PD2746 | (PF01627) | ||||
| 555779.Dthio_PD1879 | (PF01695) | ||||
| 555779.Dthio_PD3348 | (PF08448) | ||||
| 555779.Dthio_PD3612 | (PF01695) | ||||
| 555779.Dthio_PD0236 | (PF01627) | ||||
| 555779.Dthio_PD1726 | PF13173 | ||||
| 555779.Dthio_PD0053 | (PF01695) | ||||
| 555779.Dthio_PD1619 | (PF13187) | ||||
| 555779.Dthio_PD3830 | (PF08448) | ||||
| 555779.Dthio_PD3833 | (PF03050) | ||||
| 555779.Dthio_PD1472 | (PF10143) | ||||
| 555779.Dthio_PD2978 | (PF01695) | ||||
| 555779.Dthio_PD2996 | PF00362 |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: NO (FDR = 12.5 %)
- Functional Type IV secretion system: NO (FDR = 7.2 %)
- Functional Type VI secretion system: NO (FDR = 7.7 %)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
Release announcements
News
Latest publications
Contact
- +43 1 4277 76681
- +43 1 4277 876681
- contact.cube@univie.ac.at
