Metamenu

Effective results for Spirochaeta smaragdinae DSM 11293 (eggnog40)

Summary

Number of putative secreted proteins: 198
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 42 eukaryotic-like domains, contained in 198 proteins (5 high, 193 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
573413.Spirs_2737(PF00370) (PF02782)ER
573413.Spirs_3424(PF13407)ER
573413.Spirs_3031(PF13407)ER
573413.Spirs_3615(PF13407)ER
573413.Spirs_0833(PF13407)ER
573413.Spirs_0053(PF13407)ER
573413.Spirs_1180(PF02608)ER
573413.Spirs_1053(PF02608)ER
573413.Spirs_2556(PF06541)ER
573413.Spirs_3624(PF13407)ER
573413.Spirs_0229(PF13407)ER
573413.Spirs_0221PF03351ER
573413.Spirs_0820(PF13407)ER
573413.Spirs_0827(PF01970)ER
573413.Spirs_0043(PF13407)(mitochondrial)
573413.Spirs_1267(PF13407)ER
573413.Spirs_1666(PF13407)ER
573413.Spirs_0070(PF01970)ER
573413.Spirs_3101(PF06541)ER
573413.Spirs_3320(PF01875)ER
573413.Spirs_3037(PF01970)(ER); ER
573413.Spirs_0215(PF13407)ER
573413.Spirs_1270(PF13407)ER
573413.Spirs_0118(PF02608)ER
573413.Spirs_0842(PF02608)ER
573413.Spirs_1240(PF13407)ER
573413.Spirs_3275(PF02906)(mitochondrial)
573413.Spirs_3309(PF01823)ER
573413.Spirs_0781(PF00294)(ER)
573413.Spirs_2683(PF13407)ER
573413.Spirs_3460(PF13407)ER
573413.Spirs_3206(PF13174)ER
573413.Spirs_4140(PF02608)ER
573413.Spirs_4209(PF13407)ER
573413.Spirs_1349(PF00294)ER
573413.Spirs_3319(PF01871)ER
573413.Spirs_2644(PF13407)ER
573413.Spirs_3193(PF02844) (PF02843)(mitochondrial)
573413.Spirs_0750(PF13407)ER
573413.Spirs_1117(PF13407)ER
573413.Spirs_2671(PF02608)ER
573413.Spirs_0433(PF09861)(mitochondrial)
573413.Spirs_0431(PF01970)ER
573413.Spirs_0986(PF13407)ER
573413.Spirs_2068(PF13407)ER
573413.Spirs_3081(PF13407)ER
573413.Spirs_3421(PF13407)ER
573413.Spirs_0425(PF00294)(ER)
573413.Spirs_0512(PF01970)ER
573413.Spirs_0777(PF01970)ER
573413.Spirs_0355(PF01257) (PF02906) (PF02256)
573413.Spirs_0979(PF00163)mitochondrial; (mitochondrial)
573413.Spirs_3436(PF01970)(ER)
573413.Spirs_3541(PF00370) (PF02782)(mitochondrial)
573413.Spirs_0705(PF13407)ER
573413.Spirs_1765(PF13174)ER
573413.Spirs_0016(PF00465)(mitochondrial)
573413.Spirs_2047(PF13174)ER
573413.Spirs_3577(PF13407)ER
573413.Spirs_4075(PF13407)ER
573413.Spirs_4072(PF13407)ER
573413.Spirs_1029(PF13407)ER
573413.Spirs_2705(PF13407)ER
573413.Spirs_3413(PF13407)ER
573413.Spirs_1172(PF13407)ER
573413.Spirs_0816(PF01116)(mitochondrial)
573413.Spirs_1636(PF13407)ER
573413.Spirs_0556(PF02608)ER
573413.Spirs_3827(PF13174)ER
573413.Spirs_1286(PF02608)ER
573413.Spirs_4071(PF13407)ER
573413.Spirs_1862(PF13407)ER
573413.Spirs_2769(PF02608)ER
573413.Spirs_0219(PF00370) (PF02782)
573413.Spirs_0853(PF00465)(plastid)
573413.Spirs_2688(PF00294)(ER)
573413.Spirs_3804(PF00370) (PF02782)
573413.Spirs_1661(PF17042) (PF07005)
573413.Spirs_1668(PF17042) (PF07005)
573413.Spirs_4247PF04765(mitochondrial)
573413.Spirs_0056(PF00370) (PF02782)
573413.Spirs_1645(PF00370) (PF02782)
573413.Spirs_3123(PF02844) (PF02843)
573413.Spirs_3278(PF17042) (PF07005)
573413.Spirs_0474(PF02906) (PF02256)
573413.Spirs_0302(PF00370) (PF02782)
573413.Spirs_0270(PF01195)(plastid)
573413.Spirs_0786(PF00294)(ER)
573413.Spirs_1255(PF17042) (PF07005)
573413.Spirs_3687(PF02906) (PF02256)
573413.Spirs_3510(PF00163)(mitochondrial)
573413.Spirs_0645(PF01970)(ER)
573413.Spirs_4211(PF00370) (PF02782)
573413.Spirs_0799(PF00294)(mitochondrial)
573413.Spirs_1113(PF13407)(mitochondrial)
573413.Spirs_3985PF03727 PF00349
573413.Spirs_2664(PF00294)(ER)
573413.Spirs_3429(PF00370) (PF02782)
573413.Spirs_3557(PF00294)(mitochondrial)
573413.Spirs_0995(PF00370) (PF02782)
573413.Spirs_1778(PF00465)(mitochondrial)
573413.Spirs_2721(PF00370) (PF02782)
573413.Spirs_3576(PF00370) (PF02782)
573413.Spirs_1026(PF00370) (PF02782)
573413.Spirs_1620(PF00370) (PF02782)
573413.Spirs_0814(PF00370) (PF02782)
573413.Spirs_3601(PF00294)(ER)
573413.Spirs_0558(PF00370) (PF02782)
573413.Spirs_0736(PF00370) (PF02782)
573413.Spirs_1464(PF03266)(ER)
573413.Spirs_3619(PF13407)
573413.Spirs_2459(PF16886)
573413.Spirs_3585(PF00294)
573413.Spirs_0902(PF12899)
573413.Spirs_2398(PF00465)
573413.Spirs_2394(PF01008)
573413.Spirs_2392(PF00370)
573413.Spirs_3112(PF01496)
573413.Spirs_3627(PF13407)
573413.Spirs_1277(PF00294)
573413.Spirs_0826(PF00465)
573413.Spirs_1669(PF00465)
573413.Spirs_0914(PF00294)
573413.Spirs_2963(PF00294)
573413.Spirs_3106(PF01813)
573413.Spirs_3108(PF16886)
573413.Spirs_3109(PF01991)
573413.Spirs_0670PF04765
573413.Spirs_1300(PF01257)
573413.Spirs_1301(PF02906)
573413.Spirs_3642(PF00370)
573413.Spirs_1423(PF01008)
573413.Spirs_1932(PF01875)
573413.Spirs_3274(PF01257)
573413.Spirs_3657(PF02906)
573413.Spirs_0476(PF01257)
573413.Spirs_0475(PF01257)
573413.Spirs_3871(PF00294)
573413.Spirs_0877(PF00294)
573413.Spirs_1256(PF01970)
573413.Spirs_1436(PF01180)
573413.Spirs_2687(PF01116)
573413.Spirs_0317(PF00465)
573413.Spirs_3688(PF01257)
573413.Spirs_3887(PF01008)
573413.Spirs_3691(PF01257)
573413.Spirs_0259(PF03662)
573413.Spirs_0741(PF00294)
573413.Spirs_3041(PF06541)
573413.Spirs_4091(PF16011)
573413.Spirs_1594(PF00294)
573413.Spirs_3058(PF00294)
573413.Spirs_3450(PF01116)
573413.Spirs_0989(PF00162)
573413.Spirs_0988(PF09861)
573413.Spirs_4083(PF00465)
573413.Spirs_1100(PF00294)
573413.Spirs_1815(PF01195)
573413.Spirs_3085(PF00465)
573413.Spirs_3428(PF13407)
573413.Spirs_0518(PF00465)
573413.Spirs_0354(PF01257)
573413.Spirs_0353(PF01257)
573413.Spirs_1177(PF00294)
573413.Spirs_1173(PF00294)
573413.Spirs_2588(PF01116)
573413.Spirs_2275(PF01871)
573413.Spirs_2058(PF13174)
573413.Spirs_3433(PF02906)
573413.Spirs_3942(PF00294)
573413.Spirs_0363(PF00465)
573413.Spirs_0380(PF01180)
573413.Spirs_0382(PF00465)
573413.Spirs_1382(PF01116)
573413.Spirs_1383(PF00294)
573413.Spirs_2264(PF00465)
573413.Spirs_2736(PF01180)
573413.Spirs_2131(PF01180)
573413.Spirs_3399PF04587
573413.Spirs_3394(PF01116)
573413.Spirs_3974(PF00465)
573413.Spirs_4299(PF16314)
573413.Spirs_1442(PF00465)
573413.Spirs_2457(PF01813)
573413.Spirs_2456(PF01496)
573413.Spirs_1849(PF00294)
573413.Spirs_3144(PF13174)
573413.Spirs_3382(PF00465)
573413.Spirs_0813(PF00294)
573413.Spirs_0815(PF01116)
573413.Spirs_0928(PF12646)
573413.Spirs_2444(PF00162)
573413.Spirs_1856(PF00294)
573413.Spirs_4279(PF00294)
573413.Spirs_3596(PF09861)
573413.Spirs_1736(PF13174)
573413.Spirs_0737(PF01116)
573413.Spirs_1468(PF02943)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================