Effective results for Thermoanaerobacter italicus Ab9 (eggnog40)

Summary

Number of putative secreted proteins: 51
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 12 eukaryotic-like domains, contained in 51 proteins (14 high, 37 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
580331.Thit_1972				(PF05598)	(ER)
580331.Thit_0420				(PF07837) (PF02971)
580331.Thit_0824				(PF07085)
580331.Thit_0821				(PF07085)
580331.Thit_1517				(PF01409)
580331.Thit_1516				(PF01409)
580331.Thit_1367				(PF00078)
580331.Thit_1364				(PF00078)
580331.Thit_1563				PF00514
580331.Thit_0534				(PF05598)
580331.Thit_2399				(PF00078)
580331.Thit_1179				(PF05598)
580331.Thit_1928				(PF00078)
580331.Thit_0990				PF13936
580331.Thit_2281				PF13936
580331.Thit_1550				(PF00078)
580331.Thit_0288				(PF05168)
580331.Thit_1838				(PF05598)
580331.Thit_1235				(PF05598)
580331.Thit_1825				(PF05598)
580331.Thit_1824				(PF05168)
580331.Thit_2023				(PF05598)
580331.Thit_2114				PF13936
580331.Thit_2116				(PF05168)
580331.Thit_2336				(PF01991)
580331.Thit_2244				(PF05168)
580331.Thit_0663				(PF00078)
580331.Thit_0080				(PF00078)
580331.Thit_2251				(PF00078)
580331.Thit_0418				(PF05598)
580331.Thit_2132				(PF07085)
580331.Thit_2133				PF06888
580331.Thit_0934				(PF12862)
580331.Thit_0799				PF13936
580331.Thit_0648				PF13936
580331.Thit_1892				(PF05598)
580331.Thit_2012				PF13936
580331.Thit_2274				(PF05598)
580331.Thit_1781				PF13936
580331.Thit_1888				(PF00078)
580331.Thit_1314				(PF05598)
580331.Thit_1633				(PF07085)
580331.Thit_0230				PF13936
580331.Thit_0750				(PF00078)
580331.Thit_0599				PF13936
580331.Thit_1968				(PF05598)
580331.Thit_2182				PF13936
580331.Thit_1618				PF13936
580331.Thit_0103				(PF00078)
580331.Thit_0580				PF13936
580331.Thit_0560				(PF00078)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================