Effective results for Aminomonas paucivorans DSM 12260 (eggnog40)

Summary

Number of putative secreted proteins: 55
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 20 eukaryotic-like domains, contained in 55 proteins (2 high, 53 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
584708.Apau_1899				(PF16653) (PF03435)	(mitochondrial); mitochondrial
584708.Apau_0296				(PF16653) (PF03435)	(mitochondrial)
584708.Apau_1881				(PF16653) (PF03435)	(ER); ER
584708.Apau_0308				(PF03313)	mitochondrial; (mitochondrial)
584708.Apau_2329				(PF16653) (PF03435)	(mitochondrial)
584708.Apau_0369				(PF03577)	ER
584708.Apau_0368				(PF03577)	ER
584708.Apau_1901				(PF16653) (PF03435)	(mitochondrial)
584708.Apau_1902				(PF02274)	mitochondrial
584708.Apau_0711				PF08434	ER
584708.Apau_0119				(PF02274)	(mitochondrial)
584708.Apau_0290				(PF13237)	ER
584708.Apau_2196				(PF01257)	ER
584708.Apau_1873				(PF03313)	(mitochondrial)
584708.Apau_1500				(PF01813)	(mitochondrial)
584708.Apau_0458				(PF03577)	ER
584708.Apau_1852				(PF01496)	(ER)
584708.Apau_1849				(PF01813)	mitochondrial; (mitochondrial)
584708.Apau_1531				(PF13237)	mitochondrial
584708.Apau_0525				(PF01257)	(ER)
584708.Apau_0247				(PF01257) (PF13237)
584708.Apau_2194				(PF03577)	(ER)
584708.Apau_0124				(PF07837) (PF02971)
584708.Apau_1443				(PF07837) (PF02971)
584708.Apau_0796				(PF16653) (PF03435)
584708.Apau_0941				(PF14336)
584708.Apau_2130				(PF03313)
584708.Apau_0365				(PF03313)
584708.Apau_1422				(PF02274)
584708.Apau_2279				(PF02274)
584708.Apau_0222				(PF13237)
584708.Apau_2117				(PF13237)	not used
584708.Apau_1904				(PF02274)
584708.Apau_0238				(PF01257)
584708.Apau_0537				PF04414
584708.Apau_0245				(PF01257)
584708.Apau_0240				(PF01257)
584708.Apau_0526				(PF01257)
584708.Apau_0417				(PF03313)
584708.Apau_2016				(PF13237)
584708.Apau_2280				(PF02274)
584708.Apau_0615				(PF03522)
584708.Apau_0620				(PF03266)
584708.Apau_1503				(PF01990)
584708.Apau_1504				(PF01992)
584708.Apau_1505				(PF01991)
584708.Apau_1507				(PF01496)
584708.Apau_0125				(PF04961)
584708.Apau_1389				(PF13237)
584708.Apau_1854				(PF01990)
584708.Apau_1855				(PF01991)
584708.Apau_1851				(PF01992)
584708.Apau_2308				(PF01257)
584708.Apau_1445				(PF04961)
584708.Apau_0174				(PF02274)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================