Effective results for Porphyromonas uenonis 60-3 (eggnog40)

Summary

Number of putative secreted proteins: 63
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 20 eukaryotic-like domains, contained in 63 proteins (36 high, 27 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
596327.PORUE0001_1097				PF12799	ER
596327.PORUE0001_1792				PF12799	ER
596327.PORUE0001_0459				(PF13431)	ER
596327.PORUE0001_2015				PF08323	ER
596327.PORUE0001_0341				PF12812	ER
596327.PORUE0001_0569				(PF05649)	ER; (ER)
596327.PORUE0001_1803				PF12799	ER
596327.PORUE0001_1723				PF12799	ER
596327.PORUE0001_0805				(PF05649)	ER
596327.PORUE0001_0209				(PF13431)	ER
596327.PORUE0001_1039				(PF05034) (PF07476)
596327.PORUE0001_1957				(PF05649)	(mitochondrial)
596327.PORUE0001_0485				(PF02971) (PF07837)
596327.PORUE0001_1256				PF08323
596327.PORUE0001_1257				PF08323	not used
596327.PORUE0001_0268				PF13683	not used
596327.PORUE0001_2031				PF02978	not used
596327.PORUE0001_0321				(PF16314)
596327.PORUE0001_2026				(PF01175)
596327.PORUE0001_2020				(PF00035)	not used
596327.PORUE0001_1420				(PF13246)
596327.PORUE0001_1337				(PF00035)
596327.PORUE0001_2019				(PF00035)	not used
596327.PORUE0001_2016				PF08323	not used
596327.PORUE0001_2014				PF08323
596327.PORUE0001_2000				PF13683	not used
596327.PORUE0001_2001				PF13683	not used
596327.PORUE0001_1772				(PF04505)
596327.PORUE0001_0189				(PF04505)
596327.PORUE0001_1016				(PF01715)
596327.PORUE0001_0568				(PF05649)	not used
596327.PORUE0001_1718				PF12799
596327.PORUE0001_1717				PF12799	not used
596327.PORUE0001_0140				PF13683	not used
596327.PORUE0001_1828				(PF01175)
596327.PORUE0001_1827				PF08323	not used
596327.PORUE0001_1959				(PF05649)	not used
596327.PORUE0001_1958				(PF05649)	not used
596327.PORUE0001_1997				PF13683	not used
596327.PORUE0001_1996				PF13683	not used
596327.PORUE0001_1041				(PF14330)
596327.PORUE0001_0016				(PF01715)
596327.PORUE0001_1830				PF02978	not used
596327.PORUE0001_0712				(PF05693)
596327.PORUE0001_0956				PF13683
596327.PORUE0001_1449				(PF01175)
596327.PORUE0001_1448				(PF13246)
596327.PORUE0001_1995				PF13683	not used
596327.PORUE0001_1999				PF13683	not used
596327.PORUE0001_1998				PF13683	not used
596327.PORUE0001_1060				PF13683	not used
596327.PORUE0001_1269				PF08323	not used
596327.PORUE0001_1856				PF13683	not used
596327.PORUE0001_1854				PF13683	not used
596327.PORUE0001_0280				(PF05649)	not used
596327.PORUE0001_1808				(PF05649)	not used
596327.PORUE0001_0206				PF08323
596327.PORUE0001_0050				PF13683	not used
596327.PORUE0001_1503				PF02978
596327.PORUE0001_1504				PF02978	not used
596327.PORUE0001_1895				PF12569
596327.PORUE0001_0279				PF12799	not used
596327.PORUE0001_0278				PF12799	not used

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================