Metamenu

Effective results for Prochlorococcus marinus subsp. pastoris str. CCMP1986 (eggnog40)

Summary

Number of putative secreted proteins: 97
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 86 eukaryotic-like domains, contained in 97 proteins (3 high, 94 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
59919.PMM0461(PF16639) (PF01333)mitochondrial
59919.PMM0228(PF01716)ER
59919.PMM0795(PF12452)ER
59919.PMM0570(PF10716)ER
59919.PMM0571(PF11460)ER
59919.PMM0747(PF05996)(ER)
59919.PMM1644(PF01737)ER
59919.PMM1098(PF01789)ER
59919.PMM0254(PF12600)(ER); ER
59919.PMM1711(PF00862)(mitochondrial)
59919.PMM0654(PF16166)(ER)
59919.PMM0507(PF13326)(mitochondrial)
59919.PMM0500(PF11016)ER
59919.PMM0469(PF02507)ER
59919.PMM0865(PF11152)ER
59919.PMM1583(PF12046)ER
59919.PMM0689(PF00504)ER
59919.PMM0317(PF05151)ER; not used
59919.PMM0232(PF04483)(mitochondrial)
59919.PMM0298(PF00283)(ER); not used
59919.PMM1650(PF04481)(ER)
59919.PMM0251(PF00737)(mitochondrial)
59919.PMM0253(PF02532)ER; not used
59919.PMM0252(PF02468)ER; not used
59919.PMM1447(PF11805)(ER)
59919.PMM1676(PF01947)(mitochondrial)
59919.PMM0297(PF00284) (PF00283)
59919.PMM0468(PF01701)ER; not used
59919.PMM0062(PF06596)ER; not used
59919.PMM1017(PF04755)
59919.PMM0944(PF11947)
59919.PMM1495(PF11998)
59919.PMM0300(PF01788)
59919.PMM1156(PF02392)
59919.PMM0822(PF06799)
59919.PMM0314(PF01405)not used
59919.PMM1578(PF02531)
59919.PMM0145(PF10664)
59919.PMM0146(PF11371)
59919.PMM0815(PF00504)not used
59919.PMM1560(PF12617)
59919.PMM1563(PF10999)
59919.PMM0790(PF12527)
59919.PMM1172(PF13911)
59919.PMM1519(PF02605)
59919.PMM1166(PF08854)
59919.PMM0740PF03742not used
59919.PMM0744(PF11347)
59919.PMM0905(PF12159)
59919.PMM0904(PF10693)
59919.PMM0108(PF12095)
59919.PMM0299PF02419not used
59919.PMM1520(PF00796)not used
59919.PMM1523(PF00223)
59919.PMM1524(PF00223)
59919.PMM0111(PF05421)
59919.PMM1396(PF00504)not used
59919.PMM0288PF00493
59919.PMM0931(PF11282)
59919.PMM0121(PF11910)
59919.PMM1387(PF10999)
59919.PMM1473(PF11341)
59919.PMM0625(PF09493)
59919.PMM0620(PF07082)
59919.PMM0622(PF01744)
59919.PMM1287(PF13355)
59919.PMM0390(PF08853)
59919.PMM1559(PF11909)
59919.PMM1440(PF04839)
59919.PMM1058(PF02529)not used
59919.PMM0741(PF11264)
59919.PMM1152a(PF08041)not used
59919.PMM0895(PF11360)
59919.PMM0272(PF02533)not used
59919.PMM1604(PF11623)
59919.PMM1117(PF06298)not used
59919.PMM0463(PF11267)
59919.PMM1021(PF04755)
59919.PMM1330(PF08855)
59919.PMM0886(PF09353)
59919.PMM1593(PF05996)
59919.PMM1592(PF05996)
59919.PMM0260(PF11378)
59919.PMM1106(PF10674)
59919.PMM0691(PF09493)
59919.PMM1325(PF11317)
59919.PMM0852(PF04483)
59919.PMM0329(PF02427)
59919.PMM0327(PF12899)
59919.PMM0664(PF11833)
59919.PMM0667(PF12049)
59919.PMM0064(PF00504)
59919.PMM1317(PF00504)
59919.PMM0845(PF11210)
59919.PMM1483(PF04983)
59919.PMM1484(PF04983)
59919.PMM0336(PF01786)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================