Effective results for Oribacterium sp. oral taxon 078 str. F0262 (eggnog40)

Summary

Number of putative secreted proteins: 45
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 15 eukaryotic-like domains, contained in 45 proteins (5 high, 40 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
608534.GCWU000341_02273				(PF06541)	ER
608534.GCWU000341_01889				(PF13151)	(mitochondrial); mitochondrial
608534.GCWU000341_02122				(PF01094)	(ER)
608534.GCWU000341_02734				(PF06541)	ER
608534.GCWU000341_00252				(PF06541)	ER
608534.GCWU000341_02514				(PF01000) (PF01193)
608534.GCWU000341_02924				(PF01000) (PF01193)
608534.GCWU000341_00007				(PF01527)
608534.GCWU000341_02442				(PF01527)
608534.GCWU000341_01411				(PF13240)
608534.GCWU000341_01886				(PF01527)
608534.GCWU000341_01646				(PF01527)
608534.GCWU000341_01644				(PF01527)
608534.GCWU000341_01084				(PF13240)
608534.GCWU000341_01893				(PF01527)
608534.GCWU000341_02077				(PF04326)
608534.GCWU000341_01660				(PF07787)
608534.GCWU000341_01664				(PF09359)
608534.GCWU000341_01881				(PF04326)
608534.GCWU000341_01673				(PF04326)
608534.GCWU000341_02019				PF02450
608534.GCWU000341_00885				(PF04326)
608534.GCWU000341_01605				(PF01527)
608534.GCWU000341_01591				PF11443
608534.GCWU000341_00218				(PF13151)
608534.GCWU000341_01619				(PF01527)
608534.GCWU000341_01035				(PF14938)
608534.GCWU000341_02108				PF02450
608534.GCWU000341_02744				(PF01527)
608534.GCWU000341_02364				(PF13240)
608534.GCWU000341_02696				(PF09359)
608534.GCWU000341_00991				(PF13240)
608534.GCWU000341_01821				(PF01527)
608534.GCWU000341_00685				(PF03031)
608534.GCWU000341_01885				(PF01527)
608534.GCWU000341_00050				(PF12646)
608534.GCWU000341_00226				PF02450
608534.GCWU000341_01803				(PF01527)
608534.GCWU000341_01796				(PF04326)
608534.GCWU000341_01977				PF02450
608534.GCWU000341_01895				(PF01527)
608534.GCWU000341_02407				(PF13240)
608534.GCWU000341_02959				(PF01527)
608534.GCWU000341_02329				(PF01527)
608534.GCWU000341_02439				(PF01527)	not used

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================