Effective results for Burkholderia sp. CCGE1003 (eggnog40)

Summary

Number of putative secreted proteins: 963
- Predicted by EffectiveT3: 344 (high confidence), 427 (low confidence)
- Predicted by EffectiveCCBD: 34 within, 8 before, 41 behind expected region 25..70aa
- Predicted by T4SEpre: 113
- Predicted by EffectiveELD: 18 eukaryotic-like domains, contained in 53 proteins (2 high, 51 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type III, (Type IV), Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
640512.BC1003_1086		+			ER
640512.BC1003_5198				(PF08546) (PF02558)	(ER)
640512.BC1003_2728		+			(ER)
640512.BC1003_4894	+			(PF06779)	(ER); (plastid)
640512.BC1003_1529		+	+		ER
640512.BC1003_6049				(PF08546) (PF02558)	ER
640512.BC1003_4290				(PF08546) (PF02558)	(ER)
640512.BC1003_4205				(PF08546) (PF02558)	ER
640512.BC1003_4964			+		ER
640512.BC1003_3585		+			ER
640512.BC1003_1982				(PF15984)	(mitochondrial)
640512.BC1003_4001		(<)			ER
640512.BC1003_3773	+	+	+
640512.BC1003_3803				(PF11937)	ER
640512.BC1003_3774			+		ER
640512.BC1003_2644	+				(ER)
640512.BC1003_4763			+		mitochondrial
640512.BC1003_1517			+		ER
640512.BC1003_5915		+			ER; (ER)
640512.BC1003_0179		(<)			(mitochondrial)
640512.BC1003_3500			+		(ER)
640512.BC1003_2909		(>)			ER
640512.BC1003_5689			+		(mitochondrial)
640512.BC1003_3192			+		(ER)
640512.BC1003_5276		+			(ER)
640512.BC1003_5890		+			ER
640512.BC1003_3520		+			ER
640512.BC1003_0786	+				mitochondrial; (mitochondrial)
640512.BC1003_3032		(>)			(mitochondrial)
640512.BC1003_1050			+		(mitochondrial)
640512.BC1003_5757		(>)			(ER)
640512.BC1003_5778			+		ER
640512.BC1003_4161		+			ER
640512.BC1003_0641	(+)			(PF07519)	ER
640512.BC1003_3625				(PF11937)	mitochondrial; (mitochondrial)
640512.BC1003_4288			+		ER
640512.BC1003_5734			+		ER; (ER)
640512.BC1003_1866			+		ER
640512.BC1003_4889	+			(PF06779)	(ER)
640512.BC1003_0506	+				mitochondrial
640512.BC1003_5247	+				(mitochondrial)
640512.BC1003_4877		(>)			ER
640512.BC1003_0513		(>)			ER
640512.BC1003_3097			+		(ER)
640512.BC1003_3019			+		(mitochondrial)
640512.BC1003_3872			+		ER
640512.BC1003_4798			+		(ER); (mitochondrial)
640512.BC1003_2338			+		ER
640512.BC1003_2153		(>)			(ER)
640512.BC1003_3141			+		(mitochondrial)
640512.BC1003_4919	+				(mitochondrial)
640512.BC1003_2785			+		(mitochondrial)
640512.BC1003_3161	+				(ER)
640512.BC1003_1313			+		ER
640512.BC1003_4566			+		ER
640512.BC1003_3593				(PF03659)	(ER); ER
640512.BC1003_2356		(>)			ER
640512.BC1003_4548		(>)			mitochondrial
640512.BC1003_0745	+				mitochondrial
640512.BC1003_2406			+		ER
640512.BC1003_2407	+				(ER); (plastid)
640512.BC1003_1712			+		ER
640512.BC1003_4104		+			ER
640512.BC1003_5046			+		ER
640512.BC1003_5040				(PF07519)	(ER)
640512.BC1003_0987				(PF14347)	ER
640512.BC1003_3216			+		(mitochondrial)
640512.BC1003_0697				(PF08546) (PF02558)	(ER)
640512.BC1003_2959			+		ER
640512.BC1003_3494		(>)			(ER); (mitochondrial)
640512.BC1003_0761				PF16994	(mitochondrial)
640512.BC1003_3572			+		ER
640512.BC1003_2733	+				(mitochondrial); (plastid)
640512.BC1003_0484		(>)			ER
640512.BC1003_5395				(PF06884)	mitochondrial; (mitochondrial)
640512.BC1003_0802			+		mitochondrial; (mitochondrial)
640512.BC1003_5550	+				(mitochondrial); (plastid)
640512.BC1003_1388			+		mitochondrial; (mitochondrial)
640512.BC1003_4311				(PF07519)	mitochondrial; (mitochondrial)
640512.BC1003_3411			+		ER
640512.BC1003_4419		+			ER
640512.BC1003_4413		(>)			mitochondrial; (mitochondrial)
640512.BC1003_3477		(>)			mitochondrial
640512.BC1003_2121			+		ER
640512.BC1003_4640	+				(mitochondrial)
640512.BC1003_5782				(PF01075)	(ER)
640512.BC1003_0770		(>)			(mitochondrial)
640512.BC1003_0897	+				(mitochondrial); (plastid)
640512.BC1003_1143	+				ER; (ER)
640512.BC1003_0370		+			(mitochondrial)
640512.BC1003_5415		+			ER
640512.BC1003_0936			+		ER
640512.BC1003_4903				(PF14347)	ER
640512.BC1003_4902				(PF14347)	ER
640512.BC1003_3798	+				plastid
640512.BC1003_2980	+				plastid
640512.BC1003_4492	(+)				(mitochondrial)
640512.BC1003_0966	(+)				mitochondrial
640512.BC1003_0255	+				(mitochondrial)
640512.BC1003_2887	+				(plastid)
640512.BC1003_1065	(+)			(PF16155)	(mitochondrial)
640512.BC1003_1876	+	+
640512.BC1003_4863	(+)				(mitochondrial); (plastid)
640512.BC1003_0195	+				plastid
640512.BC1003_4309	+	+
640512.BC1003_3198	+		+
640512.BC1003_3992	(+)				ER; (ER)
640512.BC1003_1981	+			(PF15984)
640512.BC1003_1599	+		+
640512.BC1003_4328				(PF04324)	(mitochondrial)
640512.BC1003_5839	(+)				(mitochondrial); (plastid)
640512.BC1003_6066		(<)			(mitochondrial); not used
640512.BC1003_3955	+				(plastid)
640512.BC1003_5509	+				(plastid)
640512.BC1003_1880	(+)				ER
640512.BC1003_1083	(+)				(ER); (plastid)
640512.BC1003_1629				(PF08546) (PF02558)
640512.BC1003_4543	(+)				(mitochondrial)
640512.BC1003_0066			+		(mitochondrial)
640512.BC1003_5177	+				(mitochondrial)
640512.BC1003_5486	(+)			(PF07519)	(ER)
640512.BC1003_2773	(+)				mitochondrial; (plastid)
640512.BC1003_3644	(+)				(mitochondrial)
640512.BC1003_3662	+		+
640512.BC1003_5443	+	(>)
640512.BC1003_1568			+		(ER)
640512.BC1003_0888	+				(plastid)
640512.BC1003_5016	(+)	+			(mitochondrial)
640512.BC1003_1549	(+)				mitochondrial; (mitochondrial)
640512.BC1003_3449		(<)	+
640512.BC1003_2313	(+)				(ER)
640512.BC1003_3390	+				(plastid)
640512.BC1003_2177	(+)				(ER)
640512.BC1003_2780	(+)				(ER)
640512.BC1003_5344	(+)				(mitochondrial); plastid
640512.BC1003_6087	+				ER
640512.BC1003_5420	+				(ER)
640512.BC1003_3747				(PF08546) (PF02558)
640512.BC1003_1292			+		(plastid)
640512.BC1003_3355	+		+
640512.BC1003_3720			+		(ER)
640512.BC1003_4105	(+)				(mitochondrial)
640512.BC1003_4996	(+)				(mitochondrial)
640512.BC1003_5870	(+)				ER
640512.BC1003_0022	+				(plastid)
640512.BC1003_5659	(+)				mitochondrial
640512.BC1003_1045	(+)				mitochondrial; (mitochondrial)
640512.BC1003_3986		+			(mitochondrial)
640512.BC1003_2635	(+)				(mitochondrial)
640512.BC1003_1236	+				(plastid)
640512.BC1003_2778	+			(PF13436)
640512.BC1003_1002	+			(PF01075)
640512.BC1003_3235	(+)				mitochondrial; (mitochondrial)
640512.BC1003_1639		(>)			(plastid)
640512.BC1003_1354				(PF04324)	(ER)
640512.BC1003_5186	(+)				ER
640512.BC1003_0696	(+)				ER; (ER)
640512.BC1003_2225	(+)				ER; (ER)
640512.BC1003_0237	(+)				ER; (ER)
640512.BC1003_3904	+		+
640512.BC1003_5592	(+)				(mitochondrial)
640512.BC1003_3334	+				plastid
640512.BC1003_1448	+				(mitochondrial)
640512.BC1003_1879				PF04916 PF15508
640512.BC1003_1657	+				(plastid)
640512.BC1003_2269		+			(mitochondrial)
640512.BC1003_2846	+				plastid
640512.BC1003_1462	+				(mitochondrial)
640512.BC1003_1819			+		(plastid)
640512.BC1003_0679	+				(plastid)
640512.BC1003_5820	+				plastid
640512.BC1003_2108				(PF08546) (PF02558)
640512.BC1003_4080	(+)				mitochondrial; (mitochondrial)
640512.BC1003_2829	+				(plastid)
640512.BC1003_2821	(+)				(mitochondrial)
640512.BC1003_0773			+		(ER)
640512.BC1003_4925	+			(PF15984)
640512.BC1003_1554	+	+
640512.BC1003_2274			+		(mitochondrial)
640512.BC1003_2744	(+)				(mitochondrial)
640512.BC1003_2160	(+)				(ER)
640512.BC1003_5336	+				(plastid)
640512.BC1003_3389	+				(plastid)
640512.BC1003_1847	+
640512.BC1003_3790	+
640512.BC1003_3799	+
640512.BC1003_5431	+
640512.BC1003_4219	(+)				(mitochondrial)
640512.BC1003_0912	+
640512.BC1003_0915	+
640512.BC1003_0917	+
640512.BC1003_0666	(+)				(ER)
640512.BC1003_4965	+				not used
640512.BC1003_3366	(+)		+
640512.BC1003_3588	(+)				(plastid)
640512.BC1003_2365	+
640512.BC1003_2367	+
640512.BC1003_2982	+
640512.BC1003_1328		(>)
640512.BC1003_4008	+
640512.BC1003_4552	+
640512.BC1003_1185			+
640512.BC1003_0279	+
640512.BC1003_0278			+
640512.BC1003_5972	+
640512.BC1003_5975	+
640512.BC1003_1906	+
640512.BC1003_5680	(+)				ER; not used
640512.BC1003_3772	+
640512.BC1003_6093			+
640512.BC1003_6092	+
640512.BC1003_5203	+
640512.BC1003_5202				(PF04324)
640512.BC1003_2642	+
640512.BC1003_5019	+
640512.BC1003_3791	+
640512.BC1003_0649			+
640512.BC1003_3348	+
640512.BC1003_3342	+
640512.BC1003_3343	+
640512.BC1003_3344	+
640512.BC1003_2436				(PF06779)
640512.BC1003_5370	+
640512.BC1003_4539	+
640512.BC1003_4024	+				not used
640512.BC1003_4021	+
640512.BC1003_0074	+
640512.BC1003_5953	+
640512.BC1003_3758			+
640512.BC1003_2662	+
640512.BC1003_5611			+
640512.BC1003_5615	(+)				(mitochondrial)
640512.BC1003_0625	+
640512.BC1003_0622	+
640512.BC1003_3433	+
640512.BC1003_3922	+
640512.BC1003_0048	+
640512.BC1003_2415	+
640512.BC1003_4043	+
640512.BC1003_2256				(PF04324)
640512.BC1003_5939	+
640512.BC1003_3737	+
640512.BC1003_4189	+
640512.BC1003_5736	+
640512.BC1003_2290	+
640512.BC1003_0316	+
640512.BC1003_0705		(>)
640512.BC1003_5917	(+)				(plastid)
640512.BC1003_5911	+
640512.BC1003_2048	(+)				(plastid)
640512.BC1003_2044	+
640512.BC1003_2595	+
640512.BC1003_2621	+
640512.BC1003_2625	+
640512.BC1003_2627	+
640512.BC1003_0194	+
640512.BC1003_5071		+
640512.BC1003_4301	+
640512.BC1003_3507	+
640512.BC1003_5685		+
640512.BC1003_2964	+
640512.BC1003_3262	+
640512.BC1003_3190	+
640512.BC1003_1051	+
640512.BC1003_3994	+
640512.BC1003_3991				(PF09130)
640512.BC1003_1222	+
640512.BC1003_0174	+
640512.BC1003_5091	+
640512.BC1003_0319	+
640512.BC1003_3930	+
640512.BC1003_3036	+
640512.BC1003_1966	+
640512.BC1003_2942	+
640512.BC1003_1784	+
640512.BC1003_3207	+
640512.BC1003_4957	(+)				(ER)
640512.BC1003_2003	+
640512.BC1003_1204	+
640512.BC1003_5524	+
640512.BC1003_1394	+
640512.BC1003_4346	+
640512.BC1003_0840	+
640512.BC1003_3033			+
640512.BC1003_1647	+
640512.BC1003_1132	+
640512.BC1003_3016	+
640512.BC1003_1134	+
640512.BC1003_1941	(+)				(plastid)
640512.BC1003_2944	+
640512.BC1003_5751	(+)				(plastid)
640512.BC1003_5755	+
640512.BC1003_1414	(+)		+
640512.BC1003_0450		(>)
640512.BC1003_0453	+
640512.BC1003_3489	+
640512.BC1003_2681	+
640512.BC1003_3806	+
640512.BC1003_0136			+
640512.BC1003_0131	(+)				(plastid)
640512.BC1003_0138	+
640512.BC1003_4365		(>)
640512.BC1003_1309		(>)
640512.BC1003_3566	+
640512.BC1003_5194	+
640512.BC1003_5193		(>)
640512.BC1003_2424	+
640512.BC1003_4352	+
640512.BC1003_3976	+
640512.BC1003_3608	+
640512.BC1003_5364	(+)				(plastid)
640512.BC1003_0803				(PF01075)
640512.BC1003_2727	+
640512.BC1003_5717	(+)				(mitochondrial)
640512.BC1003_0495	+
640512.BC1003_2539		+
640512.BC1003_0643	(+)				(plastid)
640512.BC1003_3916	+
640512.BC1003_2392				(PF01075)
640512.BC1003_3621	+
640512.BC1003_5813	+
640512.BC1003_4148	+
640512.BC1003_4142	(+)				(mitochondrial)
640512.BC1003_0396	+
640512.BC1003_2553			+
640512.BC1003_5480	+
640512.BC1003_2255	+
640512.BC1003_2870	+
640512.BC1003_5731	+
640512.BC1003_2952				(PF01075)
640512.BC1003_1206	+
640512.BC1003_3646	+
640512.BC1003_0503	+
640512.BC1003_3295		(>)
640512.BC1003_2115	+
640512.BC1003_4615	+
640512.BC1003_4618	+
640512.BC1003_4690	(+)				(plastid)
640512.BC1003_0512			+
640512.BC1003_5096	+
640512.BC1003_3098	+
640512.BC1003_3898	+
640512.BC1003_2342	+
640512.BC1003_2859	+
640512.BC1003_4265	+
640512.BC1003_4405	+
640512.BC1003_1801	+
640512.BC1003_1802	+
640512.BC1003_5961		(<)
640512.BC1003_3665		(>)
640512.BC1003_3663			+
640512.BC1003_4677	+
640512.BC1003_4679	+
640512.BC1003_1074	+
640512.BC1003_5006			+
640512.BC1003_4533	+
640512.BC1003_3878	+
640512.BC1003_3874	+
640512.BC1003_2834	+
640512.BC1003_4799	+
640512.BC1003_1560	+
640512.BC1003_0742	+
640512.BC1003_4429	+
640512.BC1003_2556	+
640512.BC1003_4938	+
640512.BC1003_1820	+
640512.BC1003_3684	+
640512.BC1003_3687	+
640512.BC1003_2339	+
640512.BC1003_5308	+
640512.BC1003_1355	+
640512.BC1003_2156			+
640512.BC1003_1173	+
640512.BC1003_3948	+
640512.BC1003_3949				(PF09130)
640512.BC1003_0087			+
640512.BC1003_3856	+
640512.BC1003_3352	(+)				(plastid)
640512.BC1003_2813	+
640512.BC1003_2819	+
640512.BC1003_5795	+
640512.BC1003_5799	+
640512.BC1003_4220	+
640512.BC1003_1542	+
640512.BC1003_5670	+
640512.BC1003_4913	+
640512.BC1003_3331	+
640512.BC1003_2318		(>)
640512.BC1003_2317		(>)
640512.BC1003_1377	+
640512.BC1003_5243	+
640512.BC1003_0203	+
640512.BC1003_2784	(+)				(ER)
640512.BC1003_3784		(<)
640512.BC1003_3166	+
640512.BC1003_5401	+
640512.BC1003_0323	+
640512.BC1003_4061				(PF01075)
640512.BC1003_2190			+
640512.BC1003_5968	+
640512.BC1003_3812	+
640512.BC1003_6080	+
640512.BC1003_5427	+
640512.BC1003_5424	+
640512.BC1003_5283	+
640512.BC1003_4033	+
640512.BC1003_0909				(PF01075)
640512.BC1003_5115		+
640512.BC1003_3372	+
640512.BC1003_0954	+
640512.BC1003_3590	+
640512.BC1003_2423	+
640512.BC1003_4794			+
640512.BC1003_0951	+
640512.BC1003_4793	+
640512.BC1003_1994	+
640512.BC1003_1190	+
640512.BC1003_1197	+
640512.BC1003_1196	+
640512.BC1003_5947	+
640512.BC1003_0244			+
640512.BC1003_0249	+
640512.BC1003_6053	+
640512.BC1003_1166	(+)	(>)
640512.BC1003_3296	+
640512.BC1003_3740		(>)
640512.BC1003_3123	+
640512.BC1003_3126	+
640512.BC1003_5001	+
640512.BC1003_1072		+
640512.BC1003_3351	+
640512.BC1003_3350	+
640512.BC1003_1883			+
640512.BC1003_0006	(+)		+
640512.BC1003_4030		+
640512.BC1003_0003	+
640512.BC1003_0008			+
640512.BC1003_1714	+
640512.BC1003_3725			+
640512.BC1003_2090	+
640512.BC1003_2679	(+)				(plastid)
640512.BC1003_2898	+
640512.BC1003_2676	+
640512.BC1003_4739	(+)				plastid
640512.BC1003_1019	(+)		+
640512.BC1003_4199	+
640512.BC1003_4361	+
640512.BC1003_2467	+
640512.BC1003_2897			+
640512.BC1003_2891	+
640512.BC1003_1484		(>)
640512.BC1003_4054				(PF12588)
640512.BC1003_1739	(+)				(plastid)
640512.BC1003_1734	+
640512.BC1003_0288	+
640512.BC1003_0286	+
640512.BC1003_3705	+
640512.BC1003_1259	+
640512.BC1003_5593				(PF01075)
640512.BC1003_5044	+
640512.BC1003_1035	(+)				(ER)
640512.BC1003_1039		(>)
640512.BC1003_4318	(+)			(PF01075)
640512.BC1003_4994	+
640512.BC1003_1930			+
640512.BC1003_3272			+
640512.BC1003_3183	(+)				plastid
640512.BC1003_2588	+
640512.BC1003_2057		(>)
640512.BC1003_2631	+
640512.BC1003_0988			+
640512.BC1003_1235		(>)
640512.BC1003_0188	+
640512.BC1003_5061	+
640512.BC1003_1582		(>)
640512.BC1003_1583	+
640512.BC1003_1584	+
640512.BC1003_0956	+
640512.BC1003_0368	+
640512.BC1003_0367	+				not used
640512.BC1003_0774		+
640512.BC1003_2213	+
640512.BC1003_3513	+
640512.BC1003_1912			+
640512.BC1003_1916	+
640512.BC1003_0424		(>)
640512.BC1003_0421	+
640512.BC1003_5082		+
640512.BC1003_5884	+
640512.BC1003_4398	+
640512.BC1003_5586	+
640512.BC1003_0875	+
640512.BC1003_3021	+
640512.BC1003_3022	+
640512.BC1003_1433	+
640512.BC1003_2957		(>)
640512.BC1003_1796			+
640512.BC1003_4870		+
640512.BC1003_2487	+
640512.BC1003_6040			+
640512.BC1003_4050			+
640512.BC1003_1896	+
640512.BC1003_1892			+
640512.BC1003_1092	+
640512.BC1003_1630	+
640512.BC1003_4371	+
640512.BC1003_4379	+
640512.BC1003_1357				(PF04324)
640512.BC1003_0600	+
640512.BC1003_5315	(+)				(plastid)
640512.BC1003_3553	+
640512.BC1003_1957	+
640512.BC1003_5180	(+)				(plastid)
640512.BC1003_5181	+
640512.BC1003_2979	+
640512.BC1003_2205	+
640512.BC1003_5980	+
640512.BC1003_5983	+
640512.BC1003_5513	(+)				(mitochondrial)
640512.BC1003_5514			+
640512.BC1003_1614			+
640512.BC1003_1617	+
640512.BC1003_0947	+
640512.BC1003_0699	+
640512.BC1003_2227	+
640512.BC1003_3700	+
640512.BC1003_5160	+				not used
640512.BC1003_5165	+
640512.BC1003_2737	+
640512.BC1003_5707	+
640512.BC1003_2507			+
640512.BC1003_2503	(+)		+
640512.BC1003_2502			+
640512.BC1003_2509		(>)
640512.BC1003_3905	+
640512.BC1003_1392	+
640512.BC1003_6023	+
640512.BC1003_2076	+
640512.BC1003_4159	(+)				(mitochondrial)
640512.BC1003_0105			+
640512.BC1003_4386	+
640512.BC1003_5490	+
640512.BC1003_2246	+
640512.BC1003_2716	+
640512.BC1003_2249	+
640512.BC1003_2863		(>)
640512.BC1003_2868				(PF01075)
640512.BC1003_1443	+
640512.BC1003_4456	+
640512.BC1003_3439	+
640512.BC1003_5559	+
640512.BC1003_4063	+
640512.BC1003_4064				(PF01075)
640512.BC1003_4066		+
640512.BC1003_4607	+
640512.BC1003_1651	+
640512.BC1003_0523			+
640512.BC1003_4869		+
640512.BC1003_1465		(>)
640512.BC1003_3416	+
640512.BC1003_2105				(PF04324)
640512.BC1003_4667	+
640512.BC1003_1100	+
640512.BC1003_1109	(+)				plastid
640512.BC1003_4082	+
640512.BC1003_4088		(>)
640512.BC1003_3322	+
640512.BC1003_4882	+
640512.BC1003_3088	+
640512.BC1003_3087	+
640512.BC1003_3715	+
640512.BC1003_2827	+
640512.BC1003_5604	+
640512.BC1003_1835	+				not used
640512.BC1003_5845	+
640512.BC1003_1349	+
640512.BC1003_2127		+
640512.BC1003_1698	+
640512.BC1003_1694	+
640512.BC1003_1697	+
640512.BC1003_1693				(PF04324)
640512.BC1003_1931	+
640512.BC1003_5476	+
640512.BC1003_4785	+
640512.BC1003_4781	+
640512.BC1003_5784	+
640512.BC1003_4255		(>)
640512.BC1003_1570	(+)		+
640512.BC1003_1572			+
640512.BC1003_4433	+
640512.BC1003_0771	+
640512.BC1003_3837			+
640512.BC1003_6034	+
640512.BC1003_5070	+
640512.BC1003_4845		(<)
640512.BC1003_2498	+
640512.BC1003_5318	(+)	+
640512.BC1003_2143	+
640512.BC1003_0899	+
640512.BC1003_0097	(+)				(plastid)
640512.BC1003_1144	(+)				(mitochondrial)
640512.BC1003_4300	+
640512.BC1003_2798	+
640512.BC1003_2794			+
640512.BC1003_1250	(+)				(mitochondrial)
640512.BC1003_3151		+
640512.BC1003_4207	+
640512.BC1003_3309	(+)			(PF01075)
640512.BC1003_4579	+
640512.BC1003_1364	(+)				(plastid)
640512.BC1003_5494				(PF04324)
640512.BC1003_5495	+
640512.BC1003_5339				(PF01075)
640512.BC1003_4572	+
640512.BC1003_4577		(>)
640512.BC1003_0218	(+)
640512.BC1003_0211	(+)
640512.BC1003_0216	(+)
640512.BC1003_2713	(+)
640512.BC1003_5353	(+)
640512.BC1003_3173	(+)
640512.BC1003_3176	(+)
640512.BC1003_0914	(+)
640512.BC1003_1445	(+)
640512.BC1003_5727	(+)
640512.BC1003_2767	(+)
640512.BC1003_0719	(+)
640512.BC1003_2180	(+)
640512.BC1003_0053	(+)
640512.BC1003_0588	(+)
640512.BC1003_1901	(+)
640512.BC1003_3779	(+)
640512.BC1003_3800	(+)
640512.BC1003_3111	(+)
640512.BC1003_2643	(+)
640512.BC1003_4761	(+)
640512.BC1003_4767	(+)
640512.BC1003_1515	(+)
640512.BC1003_3824	(+)
640512.BC1003_0648	(+)
640512.BC1003_3349	(+)
640512.BC1003_3345	(+)
640512.BC1003_4397	(+)
640512.BC1003_4028	(+)				not used
640512.BC1003_5957	(+)
640512.BC1003_1701	(+)
640512.BC1003_0253	(+)
640512.BC1003_3752	(+)
640512.BC1003_3139	(+)
640512.BC1003_1283	(+)
640512.BC1003_2666	(+)
640512.BC1003_1062	(+)
640512.BC1003_0043	(+)
640512.BC1003_2071	(+)
640512.BC1003_5935	(+)
640512.BC1003_5930	(+)
640512.BC1003_1727	(+)
640512.BC1003_0592	(+)
640512.BC1003_3731	(+)
640512.BC1003_2601	(+)
640512.BC1003_4729	(+)
640512.BC1003_5833	(+)
640512.BC1003_1000	(+)
640512.BC1003_4188	(+)
640512.BC1003_2295	(+)
640512.BC1003_1928	(+)
640512.BC1003_1929	(+)
640512.BC1003_1920	(+)
640512.BC1003_3246	(+)
640512.BC1003_2049	(+)
640512.BC1003_5216	(+)
640512.BC1003_2628	(+)
640512.BC1003_0998	(+)
640512.BC1003_0996	(+)
640512.BC1003_1247	(+)
640512.BC1003_0192	(+)
640512.BC1003_0197	(+)
640512.BC1003_0199	(+)
640512.BC1003_5073	(+)
640512.BC1003_3763	(+)
640512.BC1003_4307	(+)
640512.BC1003_1595	(+)
640512.BC1003_3503	(+)
640512.BC1003_3505	(+)
640512.BC1003_5687	(+)
640512.BC1003_1760	(+)
640512.BC1003_1769	(+)
640512.BC1003_3995	(+)
640512.BC1003_2020	(+)
640512.BC1003_1226	(+)
640512.BC1003_1223	(+)
640512.BC1003_2923	(+)
640512.BC1003_0438	(+)				not used
640512.BC1003_3208	(+)
640512.BC1003_2554	(+)
640512.BC1003_5528	(+)
640512.BC1003_1203	(+)
640512.BC1003_5525	(+)
640512.BC1003_4127	(+)
640512.BC1003_1367	(+)
640512.BC1003_4344	(+)
640512.BC1003_4343	(+)
640512.BC1003_0335	(+)
640512.BC1003_3038	(+)
640512.BC1003_3527	(+)
640512.BC1003_2031	(+)
640512.BC1003_2032	(+)
640512.BC1003_1130	(+)
640512.BC1003_1133	(+)
640512.BC1003_1945	(+)
640512.BC1003_1947	(+)
640512.BC1003_4470	(+)
640512.BC1003_2940	(+)
640512.BC1003_5753	(+)
640512.BC1003_1417	(+)
640512.BC1003_4597	(+)
640512.BC1003_0454	(+)
640512.BC1003_2687	(+)
640512.BC1003_1215	(+)
640512.BC1003_0510	(+)
640512.BC1003_0867	(+)
640512.BC1003_4810	(+)
640512.BC1003_3561	(+)
640512.BC1003_2218	(+)
640512.BC1003_5779	(+)
640512.BC1003_0474	(+)
640512.BC1003_2513	(+)
640512.BC1003_5314	(+)
640512.BC1003_3604	(+)
640512.BC1003_5386	(+)
640512.BC1003_5384	(+)
640512.BC1003_5365	(+)
640512.BC1003_0115	(+)
640512.BC1003_1601	(+)
640512.BC1003_5715	(+)
640512.BC1003_5713	(+)
640512.BC1003_5712	(+)
640512.BC1003_1452	(+)
640512.BC1003_4442	(+)
640512.BC1003_0494	(+)
640512.BC1003_2533	(+)
640512.BC1003_2393	(+)
640512.BC1003_3622	(+)
640512.BC1003_5548	(+)
640512.BC1003_1844	(+)
640512.BC1003_4143	(+)
640512.BC1003_1668	(+)
640512.BC1003_0398	(+)
640512.BC1003_0538	(+)
640512.BC1003_6076	(+)
640512.BC1003_5484	(+)
640512.BC1003_2257	(+)
640512.BC1003_2708	(+)
640512.BC1003_5158	(+)
640512.BC1003_2877	(+)
640512.BC1003_4283	(+)
640512.BC1003_5863	(+)
640512.BC1003_6032	(+)
640512.BC1003_1398	(+)
640512.BC1003_2112	(+)
640512.BC1003_1645	(+)
640512.BC1003_1644	(+)
640512.BC1003_2346	(+)
640512.BC1003_2433	(+)
640512.BC1003_2340	(+)
640512.BC1003_4408	(+)
640512.BC1003_1807	(+)
640512.BC1003_3666	(+)
640512.BC1003_5853	(+)
640512.BC1003_4673	(+)
640512.BC1003_1116	(+)
640512.BC1003_0570	(+)
640512.BC1003_3875	(+)
640512.BC1003_4434	(+)
640512.BC1003_5442	(+)
640512.BC1003_5455	(+)
640512.BC1003_3688	(+)
640512.BC1003_2480	(+)
640512.BC1003_2335	(+)
640512.BC1003_5671	(+)
640512.BC1003_5675	(+)
640512.BC1003_1179	(+)
640512.BC1003_1686	(+)
640512.BC1003_0229	(+)
640512.BC1003_3854	(+)
640512.BC1003_3857	(+)
640512.BC1003_3853	(+)
640512.BC1003_2815	(+)
640512.BC1003_2818	(+)
640512.BC1003_0944	(+)
640512.BC1003_0752	(+)
640512.BC1003_4911	(+)
640512.BC1003_3393	(+)
640512.BC1003_3392	(+)
640512.BC1003_5324	(+)
640512.BC1003_5326	(+)
640512.BC1003_2170	(+)
640512.BC1003_3838	(+)
640512.BC1003_5407	(+)
640512.BC1003_0923	(+)
640512.BC1003_4973	(+)
640512.BC1003_2373	(+)
640512.BC1003_4563	(+)
640512.BC1003_4568	+
640512.BC1003_0041	(+)
640512.BC1003_1068	(+)
640512.BC1003_0872	(+)
640512.BC1003_3810	(+)
640512.BC1003_3817	(+)
640512.BC1003_6082	(+)
640512.BC1003_5422	(+)
640512.BC1003_4779	+
640512.BC1003_1503	(+)
640512.BC1003_0900	(+)
640512.BC1003_4489	(+)
640512.BC1003_5112	(+)
640512.BC1003_4242	(+)
640512.BC1003_1997	(+)
640512.BC1003_4018	(+)
640512.BC1003_1199	(+)
640512.BC1003_0850	(+)
640512.BC1003_0242	(+)
640512.BC1003_3005	(+)
640512.BC1003_1161	(+)
640512.BC1003_2658	(+)
640512.BC1003_4717	(+)
640512.BC1003_1073	(+)
640512.BC1003_0965	(+)
640512.BC1003_0969	(+)
640512.BC1003_0968	(+)
640512.BC1003_4525	(+)
640512.BC1003_0001	(+)
640512.BC1003_5925	(+)
640512.BC1003_4101	(+)
640512.BC1003_1270	(+)
640512.BC1003_1277	(+)
640512.BC1003_1275	(+)
640512.BC1003_4731	(+)
640512.BC1003_4737	(+)
640512.BC1003_1018	(+)
640512.BC1003_1017	(+)
640512.BC1003_4992	(+)
640512.BC1003_3485	(+)
640512.BC1003_4369	(+)
640512.BC1003_2465	(+)
640512.BC1003_0023	(+)
640512.BC1003_0283	(+)
640512.BC1003_3259	(+)
640512.BC1003_3254	(+)
640512.BC1003_2614	(+)
640512.BC1003_0343	(+)
640512.BC1003_4991	(+)
640512.BC1003_2440	(+)
640512.BC1003_5305	(+)
640512.BC1003_2917	(+)
640512.BC1003_4072	(+)
640512.BC1003_1759	(+)
640512.BC1003_1758	(+)
640512.BC1003_0402	(+)
640512.BC1003_0406	(+)
640512.BC1003_1041	(+)
640512.BC1003_3987	(+)
640512.BC1003_3985	(+)
640512.BC1003_3980	(+)
640512.BC1003_2051	(+)
640512.BC1003_2059	(+)
640512.BC1003_0223	(+)
640512.BC1003_3514	(+)
640512.BC1003_1913	(+)
640512.BC1003_2931	(+)
640512.BC1003_5996	(+)
640512.BC1003_1431	(+)
640512.BC1003_3816	(+)
640512.BC1003_2974	(+)
640512.BC1003_2976	(+)
640512.BC1003_0127	(+)
640512.BC1003_2038	(+)
640512.BC1003_5089	(+)
640512.BC1003_5085	(+)
640512.BC1003_5234	(+)
640512.BC1003_3020	(+)
640512.BC1003_1219	(+)
640512.BC1003_5744	(+)
640512.BC1003_3454	(+)
640512.BC1003_5056	+
640512.BC1003_3946	(+)
640512.BC1003_5538	(+)
640512.BC1003_0320	(+)
640512.BC1003_2203	(+)
640512.BC1003_5761	(+)
640512.BC1003_5763	(+)
640512.BC1003_4581	(+)
640512.BC1003_0462	(+)
640512.BC1003_0468	(+)
640512.BC1003_5518	(+)
640512.BC1003_0126	(+)
640512.BC1003_0873	(+)
640512.BC1003_6047	(+)
640512.BC1003_5162	(+)
640512.BC1003_2220	(+)
640512.BC1003_5700	(+)
640512.BC1003_1423	(+)
640512.BC1003_0485	(+)
640512.BC1003_4165	(+)
640512.BC1003_3909	(+)
640512.BC1003_4153	(+)
640512.BC1003_0815	(+)
640512.BC1003_0816	(+)
640512.BC1003_5224	(+)
640512.BC1003_3335	(+)
640512.BC1003_2529	(+)
640512.BC1003_2520	(+)
640512.BC1003_2383	(+)
640512.BC1003_2385	(+)
640512.BC1003_3651	(+)
640512.BC1003_5803	(+)
640512.BC1003_4601	(+)
640512.BC1003_0521	(+)
640512.BC1003_5633	(+)
640512.BC1003_2263	(+)
640512.BC1003_2848	(+)
640512.BC1003_4295	(+)
640512.BC1003_4293	(+)
640512.BC1003_0739	(+)
640512.BC1003_3676	(+)
640512.BC1003_2101	(+)
640512.BC1003_2104	(+)
640512.BC1003_1103	(+)
640512.BC1003_0502	(+)
640512.BC1003_3889	(+)
640512.BC1003_3712	(+)
640512.BC1003_4412	(+)
640512.BC1003_3475	(+)
640512.BC1003_3471	(+)
640512.BC1003_4648	(+)
640512.BC1003_4626	(+)
640512.BC1003_5696	(+)
640512.BC1003_5479	(+)
640512.BC1003_5789	(+)
640512.BC1003_4544	(+)
640512.BC1003_4251	(+)
640512.BC1003_4437	(+)
640512.BC1003_4436	(+)
640512.BC1003_4432	(+)
640512.BC1003_4923	(+)
640512.BC1003_4924	(+)
640512.BC1003_5668	(+)
640512.BC1003_5074	(+)
640512.BC1003_2497	(+)
640512.BC1003_5867	(+)
640512.BC1003_5646	(+)
640512.BC1003_0095	(+)
640512.BC1003_0091	(+)
640512.BC1003_3840	(+)
640512.BC1003_3847	(+)
640512.BC1003_3152	(+)
640512.BC1003_5413	(+)
640512.BC1003_3716	(+)
640512.BC1003_1550	(+)
640512.BC1003_1556	(+)
640512.BC1003_1555	(+)
640512.BC1003_3303	(+)
640512.BC1003_2161	(+)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveT3 predictions using new standard model 2.0.1 (PROTEINS.NEW.EFFECTIVET3)
• EffectiveT3 predictions using old standard model 1.0.1 (PROTEINS.OLD.EFFECTIVET3)
• EffectiveCCBD predictions (PROTEINS.CHAPERONES.TXT)
• T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
• T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: YES (FDR = 12.5 %)
  Estimated copy number = 1.2 (12/10 KEGG proteins)
• Functional Type IV secretion system: YES (FDR = 7.2 %)
  Estimated copy number = 0.0 (0/10 KEGG proteins)
• Functional Type VI secretion system: YES (FDR = 7.7 %)
  Estimated copy number = 3.375 (27/8 KEGG proteins)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================