Metamenu

Effective results for Lachnospiraceae bacterium 9_1_43BFAA (eggnog40)

Summary

Number of putative secreted proteins: 65
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 20 eukaryotic-like domains, contained in 65 proteins (8 high, 57 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
658088.HMPREF0987_00899(PF13240)(ER)
658088.HMPREF0987_01050(PF13597)ER
658088.HMPREF0987_02412(PF07720)ER; (ER)
658088.HMPREF0987_01463(PF01554)(ER)
658088.HMPREF0987_01855(PF01554)(ER)
658088.HMPREF0987_01363(PF06541)ER
658088.HMPREF0987_01362(PF01554)ER; (ER)
658088.HMPREF0987_00182(PF06541)ER
658088.HMPREF0987_00428(PF13347)ER
658088.HMPREF0987_00421(PF06541)ER
658088.HMPREF0987_01871(PF13347)(ER)
658088.HMPREF0987_02226(PF01554)(ER)
658088.HMPREF0987_01789(PF01554)(ER)
658088.HMPREF0987_02657(PF01554)(mitochondrial)
658088.HMPREF0987_00533(PF13240)
658088.HMPREF0987_00405(PF07247)
658088.HMPREF0987_00887(PF11070)
658088.HMPREF0987_02526(PF13240)
658088.HMPREF0987_02522(PF13240)
658088.HMPREF0987_02282PF13151
658088.HMPREF0987_01800(PF01554)
658088.HMPREF0987_01675(PF01416)
658088.HMPREF0987_00851(PF12646)
658088.HMPREF0987_00592(PF01416)
658088.HMPREF0987_00825PF13320
658088.HMPREF0987_01256(PF01795)
658088.HMPREF0987_01509(PF13347)
658088.HMPREF0987_02364(PF14249)
658088.HMPREF0987_02566(PF13347)
658088.HMPREF0987_01263PF13320
658088.HMPREF0987_01860(PF01554)
658088.HMPREF0987_00338(PF01470)
658088.HMPREF0987_00203(PF02689)
658088.HMPREF0987_02225(PF01554)
658088.HMPREF0987_01453(PF13240)
658088.HMPREF0987_01035PF13151
658088.HMPREF0987_02093(PF13347)
658088.HMPREF0987_02549PF01398
658088.HMPREF0987_00318(PF01470)not used
658088.HMPREF0987_00317(PF01470)
658088.HMPREF0987_00176(PF01554)
658088.HMPREF0987_00179(PF13347)
658088.HMPREF0987_01305(PF01554)
658088.HMPREF0987_01491(PF01554)
658088.HMPREF0987_01494(PF13347)
658088.HMPREF0987_01786(PF01554)
658088.HMPREF0987_00545(PF01554)
658088.HMPREF0987_01019(PF01554)
658088.HMPREF0987_00017(PF06777)
658088.HMPREF0987_02459(PF13347)
658088.HMPREF0987_00376(PF13347)
658088.HMPREF0987_00997(PF13597)not used
658088.HMPREF0987_00998(PF13597)
658088.HMPREF0987_01814PF13151
658088.HMPREF0987_00364(PF13347)
658088.HMPREF0987_00966(PF09818)
658088.HMPREF0987_00967(PF09818)
658088.HMPREF0987_00982(PF01416)
658088.HMPREF0987_02275PF13320
658088.HMPREF0987_02475(PF16011)
658088.HMPREF0987_01373(PF01554)
658088.HMPREF0987_00516PF13151
658088.HMPREF0987_01770(PF13240)
658088.HMPREF0987_00429(PF13347)
658088.HMPREF0987_01547(PF01795)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================