Metamenu

Effective results for Paludibacter propionicigenes WB4 (eggnog40)

Summary

Number of putative secreted proteins: 79
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 32 eukaryotic-like domains, contained in 79 proteins (1 high, 78 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
694427.Palpr_2124(PF13802) (PF16338) (PF17137)ER
694427.Palpr_0442(PF07488) (PF03648) (PF07477)ER
694427.Palpr_2976(PF13802) (PF16338) (PF17137)ER
694427.Palpr_1625(PF13802) (PF16338) (PF17137)ER
694427.Palpr_2119(PF13802) (PF16338)ER
694427.Palpr_1644(PF07488) (PF07477)ER
694427.Palpr_0237(PF02055) (PF17189)ER
694427.Palpr_0238(PF02055) (PF17189)ER
694427.Palpr_1623(PF16338) (PF17137)ER
694427.Palpr_0074(PF06964)ER
694427.Palpr_0628(PF00759)ER
694427.Palpr_1653(PF16499)ER
694427.Palpr_2521(PF13905)ER
694427.Palpr_1641(PF03629)ER
694427.Palpr_1642(PF03648)ER
694427.Palpr_1643(PF03629)ER
694427.Palpr_1815(PF16499)ER
694427.Palpr_1819(PF03629)(mitochondrial)
694427.Palpr_2855(PF13905)ER
694427.Palpr_0342(PF06964)ER
694427.Palpr_0341(PF14310)(ER)
694427.Palpr_2918(PF14310)ER
694427.Palpr_2247(PF04193)ER
694427.Palpr_2120(PF14310)ER
694427.Palpr_1269(PF14310)ER
694427.Palpr_1354(PF12821)ER
694427.Palpr_1774(PF00759)ER
694427.Palpr_3031(PF11028)ER
694427.Palpr_3032(PF11028)ER
694427.Palpr_1364(PF00543)(mitochondrial)
694427.Palpr_2143(PF12821)ER; (ER)
694427.Palpr_0895(PF00686)(mitochondrial)
694427.Palpr_2004(PF14310)ER
694427.Palpr_2780(PF06964)ER
694427.Palpr_2304(PF03629)ER
694427.Palpr_1630(PF16499)ER
694427.Palpr_1635(PF14310)ER
694427.Palpr_1634(PF14310)(mitochondrial)
694427.Palpr_2972(PF00759)ER
694427.Palpr_1880(PF13905)ER
694427.Palpr_1088(PF13905)ER
694427.Palpr_1626(PF16499)ER
694427.Palpr_0669(PF00759)ER
694427.Palpr_0668(PF03629)ER
694427.Palpr_2366(PF02055)ER
694427.Palpr_0582(PF06964)ER
694427.Palpr_0584(PF06964)ER
694427.Palpr_2422(PF16117)mitochondrial; (mitochondrial)
694427.Palpr_0068(PF17189)ER
694427.Palpr_1424(PF00543)mitochondrial
694427.Palpr_1425(PF00543)(mitochondrial)
694427.Palpr_2005(PF14310)ER
694427.Palpr_0243(PF14310)ER
694427.Palpr_1102(PF00543)(mitochondrial)
694427.Palpr_0246(PF04193)(plastid)
694427.Palpr_2535(PF13271)
694427.Palpr_1284(PF00686)
694427.Palpr_0627(PF02689)
694427.Palpr_2380(PF13271)
694427.Palpr_2705PF16269
694427.Palpr_2701(PF03092)
694427.Palpr_1006(PF05192)
694427.Palpr_2117(PF14310)
694427.Palpr_1462(PF12821)
694427.Palpr_1136(PF00852)
694427.Palpr_1742(PF05192)
694427.Palpr_2766(PF01477)
694427.Palpr_0404(PF14307)
694427.Palpr_0961(PF14307)
694427.Palpr_1132(PF00852)
694427.Palpr_1365(PF00543)
694427.Palpr_1141(PF14307)
694427.Palpr_0947(PF13415)
694427.Palpr_2793(PF16314)
694427.Palpr_2557(PF14310)
694427.Palpr_0150(PF05693)
694427.Palpr_1098(PF00543)
694427.Palpr_2990(PF05192)
694427.Palpr_0918(PF16011)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================