Metamenu

Effective results for Ruminococcus albus 7 = DSM 20455 (eggnog40)

Summary

Number of putative secreted proteins: 157
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 27 eukaryotic-like domains, contained in 157 proteins (77 high, 80 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
697329.Rumal_0317PF02156 PF16990ER
697329.Rumal_0863PF02156 PF16990ER
697329.Rumal_0024(PF08757) (PF13287)ER; (ER)
697329.Rumal_0076PF00457 PF02018ER
697329.Rumal_1050PF02018 (PF00759)mitochondrial
697329.Rumal_0505PF02018 (PF00759)ER
697329.Rumal_1044(PF08757) (PF13287)ER
697329.Rumal_2447PF02018 (PF00759)ER
697329.Rumal_1368PF02156 PF16990ER
697329.Rumal_1082(PF00150) PF02018ER
697329.Rumal_3152PF02156 PF16990ER
697329.Rumal_2739PF00457 PF02018ER
697329.Rumal_0764PF02018 (PF00759)ER
697329.Rumal_0299PF02156 PF16990ER
697329.Rumal_0908PF00457 PF02018ER
697329.Rumal_0487PF16990ER
697329.Rumal_0486PF16990ER
697329.Rumal_0484PF02156ER
697329.Rumal_3201(PF06541)ER
697329.Rumal_1839(PF06541)ER
697329.Rumal_0306PF13306ER
697329.Rumal_0682(PF13148)(mitochondrial); mitochondrial
697329.Rumal_1485PF02018ER
697329.Rumal_2201PF13306ER
697329.Rumal_2374(PF12646)(mitochondrial)
697329.Rumal_3189PF13306(mitochondrial)
697329.Rumal_2745PF13306ER
697329.Rumal_1460PF02018ER
697329.Rumal_0155(PF03382)ER
697329.Rumal_1046PF02018(mitochondrial); mitochondrial
697329.Rumal_1049(PF00150)ER
697329.Rumal_0733PF13306ER
697329.Rumal_2777(PF00150)ER
697329.Rumal_2775PF13306ER
697329.Rumal_1455(PF06280)(ER)
697329.Rumal_1452PF13306ER
697329.Rumal_2943(PF08757)ER
697329.Rumal_0896(PF00150)ER
697329.Rumal_0897PF13306(ER)
697329.Rumal_2013(PF13240)ER
697329.Rumal_1442(PF03382)ER
697329.Rumal_1841(PF06541)ER
697329.Rumal_1157PF13306ER
697329.Rumal_2027(PF08757)ER
697329.Rumal_2448(PF00759)ER
697329.Rumal_1434(PF01453)ER
697329.Rumal_1363(PF00150)(mitochondrial)
697329.Rumal_1369(PF00759)ER
697329.Rumal_0564(PF00150)ER
697329.Rumal_2636(PF00150)ER
697329.Rumal_2706(PF03382)ER
697329.Rumal_2456PF13306ER
697329.Rumal_2457PF13306ER
697329.Rumal_1080PF02018ER
697329.Rumal_1083(PF00759)ER
697329.Rumal_1371PF02018ER; (ER)
697329.Rumal_0778PF13306ER
697329.Rumal_1569(PF00759)ER
697329.Rumal_0769PF00457ER
697329.Rumal_3123(PF12158)ER
697329.Rumal_0905(PF00079)ER; (ER)
697329.Rumal_3059(PF00079)ER; (ER)
697329.Rumal_2508(PF13148)mitochondrial
697329.Rumal_1975PF00240ER
697329.Rumal_1754PF13306ER
697329.Rumal_0022(PF00150)ER
697329.Rumal_0025(PF13240)(mitochondrial)
697329.Rumal_0330(PF03382)ER
697329.Rumal_1033(PF00150)ER
697329.Rumal_0746PF13306ER
697329.Rumal_0327PF02156 PF16990(ER)
697329.Rumal_0323PF13306ER
697329.Rumal_0814PF13306ER
697329.Rumal_1022PF13306ER
697329.Rumal_2599(PF00150)(ER)
697329.Rumal_1871(PF13597)(mitochondrial)
697329.Rumal_0547(PF00148)(mitochondrial)
697329.Rumal_0150(PF03382) PF13306
697329.Rumal_1944(PF00148)(mitochondrial)
697329.Rumal_1415(PF01453)(mitochondrial)
697329.Rumal_0481PF02018
697329.Rumal_2930(PF03432)
697329.Rumal_3065PF12762
697329.Rumal_0784PF12762
697329.Rumal_2259(PF01807)
697329.Rumal_2435(PF00148)
697329.Rumal_2436(PF00148)
697329.Rumal_1792(PF00150)
697329.Rumal_0664(PF13148)
697329.Rumal_0510PF12762
697329.Rumal_0848PF12762
697329.Rumal_2687PF12762
697329.Rumal_1250(PF06280)
697329.Rumal_0522(PF00148)
697329.Rumal_0674PF12762
697329.Rumal_0671PF12762
697329.Rumal_2213PF13306
697329.Rumal_0697(PF01807)
697329.Rumal_2340(PF13240)
697329.Rumal_1112PF13306
697329.Rumal_1114PF12762
697329.Rumal_0534PF12762
697329.Rumal_1474(PF03432)
697329.Rumal_1127PF12762
697329.Rumal_0523(PF00148)
697329.Rumal_2743PF12762
697329.Rumal_1137(PF03050)
697329.Rumal_0551(PF00148)
697329.Rumal_0550(PF00148)
697329.Rumal_2171PF11443
697329.Rumal_2481(PF13240)
697329.Rumal_1852(PF13597)
697329.Rumal_2836PF12762
697329.Rumal_0548(PF00148)
697329.Rumal_3164(PF01991)
697329.Rumal_2017(PF00150)
697329.Rumal_1443PF12762
697329.Rumal_1845(PF00150)
697329.Rumal_2849(PF03050)
697329.Rumal_3170(PF13597)
697329.Rumal_0579PF13306
697329.Rumal_2710(PF03050)
697329.Rumal_2531PF12762
697329.Rumal_2443PF12762
697329.Rumal_1943(PF00148)
697329.Rumal_1948PF12762
697329.Rumal_1098(PF03432)
697329.Rumal_2327(PF12158)
697329.Rumal_2520(PF03050)
697329.Rumal_0357(PF03050)
697329.Rumal_2512PF12762
697329.Rumal_1419PF12762
697329.Rumal_1416(PF03050)
697329.Rumal_3240PF12762
697329.Rumal_1749PF12762
697329.Rumal_3125(PF13240)
697329.Rumal_3122(PF12158)
697329.Rumal_2505(PF01807)
697329.Rumal_2053(PF03050)
697329.Rumal_2610PF12762
697329.Rumal_1400(PF13597)
697329.Rumal_1979(PF03050)
697329.Rumal_1192PF12762
697329.Rumal_0851PF00240
697329.Rumal_0756PF12762
697329.Rumal_2261(PF03432)
697329.Rumal_2266(PF03050)
697329.Rumal_2064PF02156
697329.Rumal_1213(PF03432)
697329.Rumal_0744PF12762
697329.Rumal_0743PF13306
697329.Rumal_2079PF12762
697329.Rumal_2307(PF03432)
697329.Rumal_1513(PF01807)
697329.Rumal_1519PF13306
697329.Rumal_2097(PF13240)
697329.Rumal_0939PF13306

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================