Metamenu

Effective results for Waddlia chondrophila WSU 86-1044 (eggnog40)

Summary

Number of putative secreted proteins: 307
- Predicted by EffectiveT3: 77 (high confidence), 100 (low confidence)
- Predicted by EffectiveCCBD: 15 within, 15 before, 22 behind expected region 25..70aa
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 27 eukaryotic-like domains, contained in 99 proteins (31 high, 68 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type III

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
716544.wcw_0580(>)(PF03222)ER
716544.wcw_0886+ER
716544.wcw_0620(PF05593)ER
716544.wcw_1669(>)(ER)
716544.wcw_0320(<)(ER)
716544.wcw_1127(<)(mitochondrial)
716544.wcw_1870+ER
716544.wcw_1698PF03219ER
716544.wcw_1278(PF13592)(mitochondrial); mitochondrial
716544.wcw_1678PF03219(ER)
716544.wcw_1800(<)ER
716544.wcw_1808(PF13276)mitochondrial
716544.wcw_0190(PF03222)ER
716544.wcw_1103+ER
716544.wcw_0453(PF05593)ER
716544.wcw_1070(PF03647)ER
716544.wcw_0286(PF13592)(mitochondrial); mitochondrial
716544.wcw_0064+ER
716544.wcw_0063+(ER)
716544.wcw_0664(PF13592)(mitochondrial); mitochondrial
716544.wcw_1532(PF14566)ER
716544.wcw_1834(PF05593)ER
716544.wcw_0273+ER
716544.wcw_0267+ER
716544.wcw_1023(PF05593)ER
716544.wcw_0390(PF05593)ER
716544.wcw_0256(>)ER
716544.wcw_1556+ER
716544.wcw_0189(PF03222)(ER)
716544.wcw_1694(PF13276)mitochondrial
716544.wcw_0500+(ER)
716544.wcw_1198(PF13592)(mitochondrial); mitochondrial
716544.wcw_0753(<)ER
716544.wcw_1574(PF13592)(mitochondrial); mitochondrial
716544.wcw_1579(PF13592)(mitochondrial); mitochondrial
716544.wcw_0831(PF13592)(mitochondrial); mitochondrial
716544.wcw_0838(<)ER
716544.wcw_0223(PF13592)(mitochondrial); mitochondrial
716544.wcw_0595PF03219ER
716544.wcw_1956(PF00872)(mitochondrial)
716544.wcw_0174(PF05593)ER
716544.wcw_1885(PF13276)mitochondrial
716544.wcw_0214PF03219(ER)
716544.wcw_0960(PF08123)(mitochondrial)
716544.wcw_0991(>)ER
716544.wcw_0949(>)ER
716544.wcw_0417(PF03222)ER
716544.wcw_1856(PF05593)ER
716544.wcw_0529+(mitochondrial)
716544.wcw_1213(<)ER
716544.wcw_1452(>)(mitochondrial)
716544.wcw_0693(>)(mitochondrial); plastid
716544.wcw_1131+PF00617
716544.wcw_0323+(mitochondrial)
716544.wcw_1122(+)(ER)
716544.wcw_1699PF03219(ER)
716544.wcw_1052++
716544.wcw_1470+(plastid)
716544.wcw_1810(+)(ER)
716544.wcw_0662PF03400(plastid)
716544.wcw_1828(+)ER
716544.wcw_0470(+)ER; (ER)
716544.wcw_0654+(mitochondrial)
716544.wcw_0490+PF00621
716544.wcw_0105+plastid
716544.wcw_0050(PF00872)(mitochondrial)
716544.wcw_0114+(PF00102)
716544.wcw_1369+(plastid)
716544.wcw_1417PF03400(plastid)
716544.wcw_1760PF09825(mitochondrial)
716544.wcw_1161+(mitochondrial); not used
716544.wcw_1093(PF00872)(mitochondrial)
716544.wcw_1547PF03400(plastid)
716544.wcw_0209+(>)
716544.wcw_1842+PF01222
716544.wcw_0554PF03400(plastid)
716544.wcw_0521(+)(mitochondrial)
716544.wcw_0631PF03400(plastid)
716544.wcw_0169(>)
716544.wcw_0040(>)
716544.wcw_0043+
716544.wcw_0317(<)
716544.wcw_0406+
716544.wcw_1686PF05691
716544.wcw_1689(PF00872)
716544.wcw_1046+
716544.wcw_1910+
716544.wcw_0625(PF13276)
716544.wcw_0626(PF13276)
716544.wcw_0621+
716544.wcw_0763(>)
716544.wcw_0183(PF13276)
716544.wcw_0437+
716544.wcw_1692(PF00872)
716544.wcw_1054+
716544.wcw_0502+
716544.wcw_1902(PF00872)
716544.wcw_1901+
716544.wcw_1116+
716544.wcw_1113(PF00872)
716544.wcw_0429+
716544.wcw_0049(PF00872)
716544.wcw_0197+
716544.wcw_0601(+)(plastid)
716544.wcw_1640+
716544.wcw_1643+
716544.wcw_0292(<)
716544.wcw_0071(+)(PF03222)
716544.wcw_1251(+)plastid
716544.wcw_0674+
716544.wcw_0158(+)PF09825
716544.wcw_0847(PF05932)
716544.wcw_0840+
716544.wcw_0444+
716544.wcw_1002PF00617
716544.wcw_0658(PF13276)
716544.wcw_0129(PF09295)
716544.wcw_1713(PF02201)
716544.wcw_0661(+)PF03400
716544.wcw_1623+
716544.wcw_0719(>)
716544.wcw_1538+
716544.wcw_1837(PF00102)
716544.wcw_0459(+)(PF05593)
716544.wcw_0871+
716544.wcw_0874+
716544.wcw_1206(+)(>)
716544.wcw_0473(>)
716544.wcw_0010(PF00872)
716544.wcw_0014(+)(mitochondrial); not used
716544.wcw_0656(PF00872)
716544.wcw_0495(PF03522)
716544.wcw_1632+
716544.wcw_0724(>)
716544.wcw_0046+
716544.wcw_1888+
716544.wcw_0863(>)
716544.wcw_0269(+)(ER)
716544.wcw_1025+
716544.wcw_1021+
716544.wcw_1020+
716544.wcw_0002(PF00872)
716544.wcw_0396(+)PF00617
716544.wcw_1734+
716544.wcw_0487+
716544.wcw_0483(PF00872)
716544.wcw_1512(PF05932)
716544.wcw_0121+
716544.wcw_0812+
716544.wcw_0257(+)(plastid)
716544.wcw_1032(+)(<)
716544.wcw_1553+
716544.wcw_1728+
716544.wcw_1729(>)
716544.wcw_0109+
716544.wcw_1610(PF05932)
716544.wcw_1504+
716544.wcw_1876(<)
716544.wcw_1695+
716544.wcw_1756+
716544.wcw_0244(+)PF12340
716544.wcw_0029+not used
716544.wcw_0025+
716544.wcw_1758+
716544.wcw_0110(+)PF02338
716544.wcw_1379(>)
716544.wcw_1372+
716544.wcw_0751PF00443
716544.wcw_1402+
716544.wcw_0906(PF01697)
716544.wcw_0908(+)plastid
716544.wcw_0343+
716544.wcw_0349(>)
716544.wcw_1748+
716544.wcw_1364(PF05593)
716544.wcw_0760(+)(plastid)
716544.wcw_0562+
716544.wcw_1566(<)
716544.wcw_1569+
716544.wcw_1418PF03400
716544.wcw_1419(PF13276)
716544.wcw_1416(>)
716544.wcw_0824(PF13276)
716544.wcw_0910+
716544.wcw_1327+
716544.wcw_0359+
716544.wcw_0138+
716544.wcw_0139+
716544.wcw_1957(PF00872)
716544.wcw_0178(+)(PF05593)
716544.wcw_1883(PF00872)
716544.wcw_1559+
716544.wcw_1791(PF01704)
716544.wcw_1604PF07720
716544.wcw_1606PF07720
716544.wcw_0969(PF05932)
716544.wcw_0963PF07720
716544.wcw_0366+
716544.wcw_1762+not used
716544.wcw_1940+
716544.wcw_1169(<)
716544.wcw_1893(+)PF14311
716544.wcw_1894PF14311
716544.wcw_1897(PF13276)
716544.wcw_1092(PF00872)
716544.wcw_0545(PF13276)
716544.wcw_1238+
716544.wcw_1546(+)PF03400
716544.wcw_1789+
716544.wcw_1784+
716544.wcw_0378(PF01704)
716544.wcw_0377(PF02201)
716544.wcw_1159(<)not used
716544.wcw_1845+
716544.wcw_0799(>)
716544.wcw_0555(+)PF03400
716544.wcw_0553(+)(ER)
716544.wcw_0550(PF00872)
716544.wcw_0784(<)
716544.wcw_1208+
716544.wcw_0993+
716544.wcw_0334(<)
716544.wcw_0945(>)
716544.wcw_0304+
716544.wcw_1924+
716544.wcw_0419+
716544.wcw_0523+
716544.wcw_0522+
716544.wcw_0524(PF00872)
716544.wcw_0528+
716544.wcw_1214+
716544.wcw_0634(PF00872)
716544.wcw_0632(+)PF03400
716544.wcw_1451+
716544.wcw_0956(+)
716544.wcw_0957(+)
716544.wcw_0955(+)
716544.wcw_0084(+)
716544.wcw_0536(+)
716544.wcw_1591(+)
716544.wcw_0762(+)
716544.wcw_1872(+)
716544.wcw_1879(+)
716544.wcw_1582(+)
716544.wcw_0729(+)
716544.wcw_0996(+)
716544.wcw_0992(+)
716544.wcw_1249(+)
716544.wcw_1244(+)
716544.wcw_1814(+)
716544.wcw_1819(+)
716544.wcw_0075(+)
716544.wcw_0672(+)
716544.wcw_1658(+)
716544.wcw_0849(+)
716544.wcw_0283(+)
716544.wcw_0067(+)
716544.wcw_0711(+)
716544.wcw_1530(+)
716544.wcw_0274(+)
716544.wcw_0499(+)
716544.wcw_1631(+)
716544.wcw_1635(+)
716544.wcw_0468(+)
716544.wcw_0127(+)
716544.wcw_1609(+)
716544.wcw_1356(+)
716544.wcw_1514(+)
716544.wcw_0251(+)
716544.wcw_0250(+)
716544.wcw_0259(+)not used
716544.wcw_1505+
716544.wcw_1421(+)
716544.wcw_0247(+)
716544.wcw_1058(+)
716544.wcw_1753(+)
716544.wcw_0236(+)
716544.wcw_0234(+)
716544.wcw_0902(+)
716544.wcw_0340(+)
716544.wcw_1743(+)
716544.wcw_1568(+)
716544.wcw_1410(+)
716544.wcw_1771(+)
716544.wcw_0686(+)
716544.wcw_0173(+)
716544.wcw_1797(+)
716544.wcw_1605(+)
716544.wcw_1601(+)
716544.wcw_0961(+)
716544.wcw_0360(+)
716544.wcw_0368(+)
716544.wcw_1942(+)
716544.wcw_1166(+)
716544.wcw_1786(+)
716544.wcw_1949(+)
716544.wcw_1935(+)
716544.wcw_1156(+)
716544.wcw_0791(+)
716544.wcw_0556(+)
716544.wcw_0559(+)
716544.wcw_1441(+)
716544.wcw_1445(+)
716544.wcw_0301(+)
716544.wcw_1922(+)
716544.wcw_0638+
716544.wcw_1459(+)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: YES (FDR = 12.5 %)
    Estimated copy number = 0.9 (9/10 KEGG proteins)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================