Effective results for Coprococcus catus GD/7 (eggnog40)

Summary

Number of putative secreted proteins: 69
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 21 eukaryotic-like domains, contained in 69 proteins (1 high, 68 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
717962.CC1_21350				(PF05257)	ER
717962.CC1_28330				(PF05738)	ER
717962.CC1_25840				(PF05738)	ER
717962.CC1_08820				(PF05738)	ER
717962.CC1_28320				(PF05738)	(mitochondrial); (ER)
717962.CC1_09480				(PF05738)	ER
717962.CC1_02290				(PF05257)	(ER)
717962.CC1_05040				(PF00625)	(mitochondrial)
717962.CC1_20980				(PF00625)	(mitochondrial)
717962.CC1_21440				(PF05738)	ER
717962.CC1_02050				(PF05738)	ER
717962.CC1_10540				(PF08011) (PF09820)
717962.CC1_05550				(PF08011) (PF09820)
717962.CC1_32980				(PF08011) (PF09820)
717962.CC1_26910				(PF08011) (PF09820)
717962.CC1_28040				(PF08011) (PF09820)
717962.CC1_28520				(PF08011) (PF09820)
717962.CC1_00950				(PF09820)	(plastid)
717962.CC1_13360				(PF00381)
717962.CC1_32000				(PF06777)
717962.CC1_14210				(PF01869)
717962.CC1_05770				(PF07247)
717962.CC1_01430				(PF00381)
717962.CC1_23050				(PF01795)
717962.CC1_12680				(PF12646)
717962.CC1_25450				(PF13597)
717962.CC1_23680				(PF00381)
717962.CC1_06400				(PF01869)
717962.CC1_09700				(PF05257)
717962.CC1_26360				(PF04326)
717962.CC1_06360				(PF01869)
717962.CC1_26310				(PF03432)
717962.CC1_01470				(PF03630)
717962.CC1_33040				(PF01795)
717962.CC1_16430				(PF00381)
717962.CC1_28420				(PF06250)
717962.CC1_23500				(PF00625)
717962.CC1_01860				(PF00381)
717962.CC1_04980				PF12314
717962.CC1_25140				(PF09861)
717962.CC1_07880				(PF06250)
717962.CC1_31500				(PF06250)
717962.CC1_13270				(PF09861)
717962.CC1_08510				(PF04326)
717962.CC1_10800				(PF09861)
717962.CC1_23360				(PF00381)
717962.CC1_09020				(PF05257)
717962.CC1_09590				(PF03432)
717962.CC1_30160				(PF03432)
717962.CC1_17020				(PF01869)
717962.CC1_28220				(PF04326)
717962.CC1_14150				(PF13597)	not used
717962.CC1_00550				(PF06250)
717962.CC1_22550				(PF03432)
717962.CC1_01280				(PF02938)
717962.CC1_14160				(PF13597)
717962.CC1_24880				(PF00381)
717962.CC1_30150				(PF04326)
717962.CC1_02000				(PF14311)
717962.CC1_33810				(PF02938)
717962.CC1_15800				(PF01869)
717962.CC1_03940				(PF04326)
717962.CC1_31070				(PF00958)
717962.CC1_32480				(PF00381)
717962.CC1_20560				(PF13597)
717962.CC1_31910				(PF04326)
717962.CC1_08900				(PF03432)
717962.CC1_07060				(PF01869)
717962.CC1_31900				(PF00958)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================