Effective results for Synechococcus sp. WH 8102 (eggnog40)
Summary
Number of putative secreted proteins: 148
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 108 eukaryotic-like domains, contained in 148 proteins (4 high, 144 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
| Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
|---|---|---|---|---|---|
| 84588.SYNW1842 | (PF16639) (PF01333) | ER | |||
| 84588.SYNW0290 | (PF07444) | ER | |||
| 84588.SYNW0499 | (PF11805) | ER | |||
| 84588.SYNW1289 | (PF12159) | ER | |||
| 84588.SYNW2384 | (PF01947) | (ER) | |||
| 84588.SYNW0581 | (PF11317) | ER | |||
| 84588.SYNW0678 | (PF02392) | ER | |||
| 84588.SYNW1835 | (PF02507) | ER | |||
| 84588.SYNW1220 | (PF11152) | ER | |||
| 84588.SYNW0775 | (PF12452) | ER | |||
| 84588.SYNW2038 | (PF12046) | ER | |||
| 84588.SYNW0375 | (PF04755) | ER; (ER) | |||
| 84588.SYNW1688 | (PF13301) | ER | |||
| 84588.SYNW0081 | (PF01737) | (ER) | |||
| 84588.SYNW1772 | (PF13326) | mitochondrial | |||
| 84588.SYNW0303 | (PF01716) | ER | |||
| 84588.SYNW2510 | (PF16166) | ER | |||
| 84588.SYNW2191 | (PF06514) | ER | |||
| 84588.SYNW0618 | (PF03567) | (mitochondrial) | |||
| 84588.SYNW0333 | (PF07444) | ER; (ER) | |||
| 84588.SYNW1520 | (PF11460) | ER | |||
| 84588.SYNW1521 | (PF10716) | ER | |||
| 84588.SYNW0076 | (PF04481) | (mitochondrial) | |||
| 84588.SYNW2066 | (PF11909) | (mitochondrial) | |||
| 84588.SYNW1288 | (PF10693) | (ER) | |||
| 84588.SYNW0393 | (PF03567) | (ER) | |||
| 84588.SYNW0243 | (PF02533) | (ER); not used | |||
| 84588.SYNW0638 | (PF09366) | (plastid) | |||
| 84588.SYNW1960 | (PF02427) | (mitochondrial) | |||
| 84588.SYNW0150 | (PF11623) | (plastid) | |||
| 84588.SYNW0898 | (PF06298) | ER; not used | |||
| 84588.SYNW1779 | (PF11016) | (ER) | |||
| 84588.SYNW1081 | (PF11347) | (plastid) | |||
| 84588.SYNW0203 | (PF00283) | (ER); not used | |||
| 84588.SYNW0204 | (PF00284) (PF00283) | ||||
| 84588.SYNW0334 | (PF06596) | ER; not used | |||
| 84588.SYNW0927 | (PF01789) | (plastid) | |||
| 84588.SYNW2403 | (PF00504) | (mitochondrial) | |||
| 84588.SYNW0268 | (PF02468) | ER; not used | |||
| 84588.SYNW0870 | (PF13759) | ||||
| 84588.SYNW2412 | (PF13481) | ||||
| 84588.SYNW2259 | (PF11371) | ||||
| 84588.SYNW2258 | (PF10664) | ||||
| 84588.SYNW1054 | (PF11282) | ||||
| 84588.SYNW1345 | (PF14216) | ||||
| 84588.SYNW1833 | (PF00504) | not used | |||
| 84588.SYNW1619 | (PF13355) | ||||
| 84588.SYNW1479 | (PF08854) | ||||
| 84588.SYNW1470 | (PF00124) | ||||
| 84588.SYNW0677 | (PF00124) | ||||
| 84588.SYNW0496 | (PF13759) | ||||
| 84588.SYNW2065 | (PF12617) | ||||
| 84588.SYNW2060 | (PF10999) | ||||
| 84588.SYNW0391 | (PF03567) | ||||
| 84588.SYNW1267 | (PF11360) | ||||
| 84588.SYNW0682a | (PF08041) | not used | |||
| 84588.SYNW0251 | (PF09366) | ||||
| 84588.SYNW0250 | (PF13301) | ||||
| 84588.SYNW1381 | (PF02672) | ||||
| 84588.SYNW0656 | (PF08853) | ||||
| 84588.SYNW1252 | (PF09353) | ||||
| 84588.SYNW0257 | (PF11378) | ||||
| 84588.SYNW0726 | (PF14159) | ||||
| 84588.SYNW0721 | (PF02529) | not used | |||
| 84588.SYNW1926 | (PF02672) | ||||
| 84588.SYNW1924 | (PF10063) | ||||
| 84588.SYNW0821 | (PF11397) | ||||
| 84588.SYNW2044 | (PF02531) | ||||
| 84588.SYNW0628 | (PF11341) | ||||
| 84588.SYNW0758 | (PF13911) | ||||
| 84588.SYNW0833 | (PF06799) | ||||
| 84588.SYNW2297 | (PF01795) | ||||
| 84588.SYNW2298 | (PF01795) | ||||
| 84588.SYNW2055 | (PF14159) | ||||
| 84588.SYNW1014 | (PF07082) | ||||
| 84588.SYNW1729 | (PF08847) | ||||
| 84588.SYNW0521 | (PF02941) | ||||
| 84588.SYNW1349 | (PF10544) | ||||
| 84588.SYNW1836 | (PF01701) | not used | |||
| 84588.SYNW0298 | (PF04483) | ||||
| 84588.SYNW0741 | (PF13759) | ||||
| 84588.SYNW2117 | (PF00796) | not used | |||
| 84588.SYNW2118 | (PF02605) | ||||
| 84588.SYNW2020 | (PF05996) | ||||
| 84588.SYNW2021 | (PF05996) | ||||
| 84588.SYNW2024 | (PF06206) | ||||
| 84588.SYNW0510 | (PF04839) | ||||
| 84588.SYNW1186 | (PF13481) | ||||
| 84588.SYNW1919 | (PF00124) | ||||
| 84588.SYNW0983 | (PF00124) | ||||
| 84588.SYNW0100 | (PF03567) | ||||
| 84588.SYNW1980 | (PF05151) | not used | |||
| 84588.SYNW1033 | (PF11947) | ||||
| 84588.SYNW0615 | (PF04983) | ||||
| 84588.SYNW0614 | (PF04983) | ||||
| 84588.SYNW1217 | (PF03040) | ||||
| 84588.SYNW1697 | (PF13301) | ||||
| 84588.SYNW1965 | (PF12899) | ||||
| 84588.SYNW2003 | (PF06206) | ||||
| 84588.SYNW0887 | (PF01786) | ||||
| 84588.SYNW1208 | (PF04483) | ||||
| 84588.SYNW0579 | (PF05168) | ||||
| 84588.SYNW2124 | (PF00223) | ||||
| 84588.SYNW2123 | (PF00223) | ||||
| 84588.SYNW2122 | (PF12204) | ||||
| 84588.SYNW0891 | (PF13481) | ||||
| 84588.SYNW0567 | (PF08855) | ||||
| 84588.SYNW1302 | (PF11264) | ||||
| 84588.SYNW1303 | PF03742 | not used | |||
| 84588.SYNW0366 | (PF13481) | ||||
| 84588.SYNW0780 | (PF12527) | ||||
| 84588.SYNW2151 | (PF00124) | ||||
| 84588.SYNW2206 | (PF05421) | ||||
| 84588.SYNW2203 | (PF12095) | ||||
| 84588.SYNW1575 | (PF13481) | ||||
| 84588.SYNW0318 | (PF02943) | ||||
| 84588.SYNW2143 | (PF09366) | ||||
| 84588.SYNW2219 | (PF11910) | ||||
| 84588.SYNW1549 | (PF04755) | ||||
| 84588.SYNW0233 | (PF03492) | ||||
| 84588.SYNW1084 | (PF05996) | ||||
| 84588.SYNW1152 | (PF11833) | ||||
| 84588.SYNW1155 | (PF12049) | ||||
| 84588.SYNW0201 | (PF01788) | ||||
| 84588.SYNW0202 | PF02419 | not used | |||
| 84588.SYNW1331 | (PF00504) | ||||
| 84588.SYNW0330 | (PF00504) | ||||
| 84588.SYNW0682 | PF02005 | ||||
| 84588.SYNW0859 | (PF08417) | ||||
| 84588.SYNW2180 | (PF00504) | not used | |||
| 84588.SYNW2232 | (PF00124) | ||||
| 84588.SYNW1983 | (PF01405) | not used | |||
| 84588.SYNW1454 | (PF02672) | ||||
| 84588.SYNW0079 | (PF03567) | ||||
| 84588.SYNW0911 | (PF10674) | ||||
| 84588.SYNW0864 | (PF01744) | ||||
| 84588.SYNW2245 | (PF13481) | ||||
| 84588.SYNW1531 | PF00996 | ||||
| 84588.SYNW1199 | (PF11210) | ||||
| 84588.SYNW0354 | (PF10544) | ||||
| 84588.SYNW0467 | (PF05168) | ||||
| 84588.SYNW0469 | (PF05168) | ||||
| 84588.SYNW1449 | (PF00504) | ||||
| 84588.SYNW0269 | (PF00737) | ||||
| 84588.SYNW0266 | (PF02532) | not used | |||
| 84588.SYNW0265 | (PF12600) | ||||
| 84588.SYNW1840 | (PF11267) | ||||
| 84588.SYNW0480 | (PF05168) |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: NO (FDR = 12.5 %)
- Functional Type IV secretion system: NO (FDR = 7.2 %)
- Functional Type VI secretion system: NO (FDR = 7.7 %)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
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