Metamenu

Effective results for Streptococcus parasanguinis ATCC 903 (eggnog40)

Summary

Number of putative secreted proteins: 101
- Predicted by T4SEpre: 103
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 19 proteins (1 high, 18 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
888048.HMPREF8577_1339(PF00344)ER
888048.HMPREF8577_0953+ER; (ER)
888048.HMPREF8577_1681(PF13787)ER
888048.HMPREF8577_1058+mitochondrial
888048.HMPREF8577_1057+ER
888048.HMPREF8577_1309(PF03644)(mitochondrial)
888048.HMPREF8577_0546+mitochondrial; (mitochondrial)
888048.HMPREF8577_1220(PF13787)ER
888048.HMPREF8577_1958+ER
888048.HMPREF8577_0157+ER
888048.HMPREF8577_0214+ER
888048.HMPREF8577_1021+ER
888048.HMPREF8577_1154+(mitochondrial)
888048.HMPREF8577_1974+(mitochondrial)
888048.HMPREF8577_0991(PF03577)ER
888048.HMPREF8577_1365(PF03577)ER
888048.HMPREF8577_2060+ER
888048.HMPREF8577_0236+ER
888048.HMPREF8577_1722+ER
888048.HMPREF8577_1431+ER
888048.HMPREF8577_1438+mitochondrial
888048.HMPREF8577_1111+ER
888048.HMPREF8577_1601+mitochondrial
888048.HMPREF8577_1738+ER
888048.HMPREF8577_1129+ER
888048.HMPREF8577_0099(PF03083)ER
888048.HMPREF8577_1132+ER
888048.HMPREF8577_1094+(mitochondrial); (plastid)
888048.HMPREF8577_1279(PF03577)ER
888048.HMPREF8577_0450+ER
888048.HMPREF8577_0356+ER
888048.HMPREF8577_1988+ER
888048.HMPREF8577_0618+ER
888048.HMPREF8577_0035+ER
888048.HMPREF8577_0324+(ER); ER
888048.HMPREF8577_1664(PF00344)mitochondrial
888048.HMPREF8577_0534+(ER)
888048.HMPREF8577_1504+(mitochondrial)
888048.HMPREF8577_1513+(mitochondrial)
888048.HMPREF8577_1188(PF07837) (PF02971)
888048.HMPREF8577_1205+
888048.HMPREF8577_1190(PF01268)
888048.HMPREF8577_0135+
888048.HMPREF8577_1302+
888048.HMPREF8577_0497+
888048.HMPREF8577_1645+
888048.HMPREF8577_1821+
888048.HMPREF8577_1824+
888048.HMPREF8577_0577+
888048.HMPREF8577_1564+
888048.HMPREF8577_2057+
888048.HMPREF8577_1370+
888048.HMPREF8577_0775+
888048.HMPREF8577_1576+
888048.HMPREF8577_0516+
888048.HMPREF8577_0993+
888048.HMPREF8577_0359+not used
888048.HMPREF8577_1715+
888048.HMPREF8577_2065+
888048.HMPREF8577_1010+
888048.HMPREF8577_1345+
888048.HMPREF8577_1342+
888048.HMPREF8577_1343+
888048.HMPREF8577_0508+
888048.HMPREF8577_0439+
888048.HMPREF8577_0181+
888048.HMPREF8577_2079+
888048.HMPREF8577_2077+not used
888048.HMPREF8577_2072+
888048.HMPREF8577_0743+
888048.HMPREF8577_0522(PF01268)
888048.HMPREF8577_0521(PF01268)
888048.HMPREF8577_1433+
888048.HMPREF8577_1678+
888048.HMPREF8577_1288+
888048.HMPREF8577_1424PF02916
888048.HMPREF8577_1707+
888048.HMPREF8577_0097(PF03083)
888048.HMPREF8577_1398+
888048.HMPREF8577_0040+
888048.HMPREF8577_1892(PF03596)
888048.HMPREF8577_1095+
888048.HMPREF8577_1091+
888048.HMPREF8577_0700+
888048.HMPREF8577_0706+
888048.HMPREF8577_1270+
888048.HMPREF8577_0672+
888048.HMPREF8577_0670+
888048.HMPREF8577_0054+
888048.HMPREF8577_0052+
888048.HMPREF8577_1868+
888048.HMPREF8577_1264(PF03577)
888048.HMPREF8577_0059+
888048.HMPREF8577_0592(PF14311)
888048.HMPREF8577_1511+
888048.HMPREF8577_1700+
888048.HMPREF8577_0638+
888048.HMPREF8577_1985+
888048.HMPREF8577_1663+
888048.HMPREF8577_1848+
888048.HMPREF8577_1845(PF03596)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0 (0/0 KEGG proteins)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================