Metamenu

Effective results for Arthrobacter phenanthrenivorans Sphe3 (eggnog40)

Summary

Number of putative secreted proteins: 44
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 9 eukaryotic-like domains, contained in 44 proteins (0 high, 44 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
930171.Asphe3_06270(PF08244)ER; (mitochondrial)
930171.Asphe3_34100(PF13653)ER
930171.Asphe3_06970(PF08244)ER
930171.Asphe3_31540(PF13936)
930171.Asphe3_06410(PF02371)
930171.Asphe3_34660(PF02371)
930171.Asphe3_09000(PF12900)
930171.Asphe3_20900(PF12900)
930171.Asphe3_22980(PF13551)
930171.Asphe3_18850(PF13551)
930171.Asphe3_21260(PF08244)
930171.Asphe3_30450(PF08244)
930171.Asphe3_07270(PF13551)
930171.Asphe3_07500(PF02371)
930171.Asphe3_21020(PF12900)
930171.Asphe3_14910(PF13936)
930171.Asphe3_18600(PF12900)
930171.Asphe3_37540(PF02371)
930171.Asphe3_14920(PF02371)
930171.Asphe3_36950(PF12900)
930171.Asphe3_21000(PF12900)
930171.Asphe3_07330(PF02371)
930171.Asphe3_01780(PF02371)
930171.Asphe3_22270(PF02371)
930171.Asphe3_22110(PF13936)
930171.Asphe3_25260(PF13551)
930171.Asphe3_35330(PF12900)
930171.Asphe3_34420(PF00413)
930171.Asphe3_22070(PF02371)
930171.Asphe3_06960(PF08244)
930171.Asphe3_37530(PF13936)
930171.Asphe3_00160(PF00643)
930171.Asphe3_08800(PF00413)
930171.Asphe3_28040(PF13936)
930171.Asphe3_25540(PF02371)
930171.Asphe3_07340(PF13936)
930171.Asphe3_30140(PF00413)
930171.Asphe3_32430(PF09224)
930171.Asphe3_01770(PF13936)
930171.Asphe3_28050(PF02371)
930171.Asphe3_25550(PF13936)
930171.Asphe3_31550(PF02371)
930171.Asphe3_06400(PF02371)
930171.Asphe3_28110(PF02371)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================