Effective results for Prochlorococcus marinus str. MIT 9215 (eggnog40)

Summary

Number of putative secreted proteins: 100
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 84 eukaryotic-like domains, contained in 100 proteins (8 high, 92 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
93060.P9215_05411				(PF16639) (PF01333)	(ER)
93060.P9215_05491				(PF02507)	ER
93060.P9215_03981				(PF11196)	(ER)
93060.P9215_07361				(PF16166)	ER
93060.P9215_01291				(PF05421)	(ER); (plastid)
93060.P9215_12931				PF02077	ER
93060.P9215_10281				(PF11152)	ER
93060.P9215_05891				(PF13326)	mitochondrial
93060.P9215_08901				(PF12452)	ER
93060.P9215_16571				PF02468	ER
93060.P9215_06531				(PF11460)	ER
93060.P9215_18551				(PF12046)	ER
93060.P9215_19171				(PF01737)	ER
93060.P9215_07841				(PF00504)	ER
93060.P9215_02781				(PF12600)	ER
93060.P9215_12341				(PF01789)	ER
93060.P9215_05821				(PF11016)	ER
93060.P9215_15541				(PF11317)	(ER)
93060.P9215_03421				(PF05151)	ER; not used
93060.P9215_17411				(PF11341)	(ER)
93060.P9215_17881				(PF00796)	ER; not used
93060.P9215_03231				(PF00283)	(ER); not used
93060.P9215_02741				(PF00737)	(mitochondrial)
93060.P9215_03221				(PF00284) (PF00283)
93060.P9215_02771				(PF02532)	ER; not used
93060.P9215_02761				PF02468	ER; not used
93060.P9215_02541				(PF04483)	(mitochondrial)
93060.P9215_02841				(PF11378)
93060.P9215_03521				(PF12899)
93060.P9215_09971				(PF11360)
93060.P9215_08351				(PF11264)
93060.P9215_00761				(PF00504)
93060.P9215_17641				(PF11998)
93060.P9215_04671				(PF08853)
93060.P9215_17151				(PF11805)
93060.P9215_07521				(PF12049)
93060.P9215_13781				(PF08854)
93060.P9215_03401				(PF00421)
93060.P9215_18661				(PF05996)
93060.P9215_13861				(PF13911)
93060.P9215_18781				(PF11623)
93060.P9215_10061				(PF09353)
93060.P9215_11931				(PF02529)	not used
93060.P9215_18651				(PF05996)
93060.P9215_09591				(PF11282)
93060.P9215_00741				(PF06596)
93060.P9215_19231				(PF04481)
93060.P9215_18321				(PF12617)
93060.P9215_15591				(PF08855)
93060.P9215_08411				(PF05996)
93060.P9215_13841				(PF00421)
93060.P9215_13191				PF10999
93060.P9215_01631				(PF11371)
93060.P9215_17531				(PF04983)
93060.P9215_01621				(PF10664)
93060.P9215_08381				(PF11347)
93060.P9215_18501				(PF02531)
93060.P9215_17521				(PF04983)
93060.P9215_11801				(PF11196)
93060.P9215_05431				(PF11267)
93060.P9215_18351				PF10999
93060.P9215_15461				(PF00504)
93060.P9215_04061				(PF03492)
93060.P9215_13231				(PF00283)
93060.P9215_07491				(PF11833)
93060.P9215_17081				(PF04839)
93060.P9215_03391				(PF01405)	not used
93060.P9215_10811				(PF06799)
93060.P9215_03131				PF00493
93060.P9215_03641				(PF01786)
93060.P9215_09871				(PF12159)
93060.P9215_01391				(PF11910)
93060.P9215_12421				(PF10674)
93060.P9215_03251				(PF01788)
93060.P9215_09881				(PF10693)
93060.P9215_19491				(PF01947)
93060.P9215_07021				(PF07082)
93060.P9215_01251				(PF12095)
93060.P9215_02501				(PF01716)
93060.P9215_09461				(PF11947)
93060.P9215_03241				PF02419	not used
93060.P9215_08851				(PF12527)
93060.P9215_17911				(PF00223)
93060.P9215_17871				(PF02605)
93060.P9215_10481				(PF04483)
93060.P9215_13621				(PF02392)
93060.P9215_07041				(PF01744)
93060.P9215_18311				(PF11909)
93060.P9215_02961				(PF02533)	not used
93060.P9215_07101				(PF00421)
93060.P9215_07071				(PF09493)
93060.P9215_13351				(PF00504)	not used
93060.P9215_13641				(PF00421)
93060.P9215_10561				(PF11210)
93060.P9215_17921				(PF00223)
93060.P9215_13131				PF10999
93060.P9215_07871				(PF09493)
93060.P9215_03551				(PF02427)
93060.P9215_15151				(PF13355)
93060.P9215_12531				(PF06298)	not used

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================