Effective results for Parvimonas sp. oral taxon 393 str. F0440 (eggnog40)

Summary

Number of putative secreted proteins: 45
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 20 eukaryotic-like domains, contained in 45 proteins (11 high, 34 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
944565.HMPREF9127_1518				(PF05738)	(ER)
944565.HMPREF9127_0230				(PF00079)	ER
944565.HMPREF9127_1516				(PF05738)	ER; (ER)
944565.HMPREF9127_0039				(PF05738)	ER
944565.HMPREF9127_0114				(PF05738)	ER
944565.HMPREF9127_1663				(PF05684)	(mitochondrial)
944565.HMPREF9127_1592				PF00177	(mitochondrial)
944565.HMPREF9127_0853				PF15807	ER
944565.HMPREF9127_0850				(PF05738)	ER
944565.HMPREF9127_0277				(PF01496)	mitochondrial
944565.HMPREF9127_0284				(PF01813)	mitochondrial
944565.HMPREF9127_1343				(PF01813)	(mitochondrial)
944565.HMPREF9127_0115				(PF02844)	(mitochondrial)
944565.HMPREF9127_0884				PF02916	(ER)
944565.HMPREF9127_0660				PF00276	not used
944565.HMPREF9127_1350				(PF01992)
944565.HMPREF9127_0659				PF00276	not used
944565.HMPREF9127_0226				(PF00079)
944565.HMPREF9127_0280				(PF01992)
944565.HMPREF9127_1349				(PF01496)
944565.HMPREF9127_1186				(PF01195)
944565.HMPREF9127_1185				(PF01195)
944565.HMPREF9127_1345				(PF16886)
944565.HMPREF9127_0962				(PF05738)
944565.HMPREF9127_0961				(PF05738)
944565.HMPREF9127_0360				(PF03266)
944565.HMPREF9127_1394				PF04991
944565.HMPREF9127_0410				(PF04127)
944565.HMPREF9127_0780				(PF02844)
944565.HMPREF9127_1347				(PF01990)
944565.HMPREF9127_0776				(PF13507)
944565.HMPREF9127_0775				(PF13507)
944565.HMPREF9127_0409				(PF04127)
944565.HMPREF9127_1593				PF00177	not used
944565.HMPREF9127_0423				(PF16199)
944565.HMPREF9127_1104				PF04991
944565.HMPREF9127_1006				(PF16199)
944565.HMPREF9127_0290				(PF16199)
944565.HMPREF9127_0279				(PF01991)
944565.HMPREF9127_0282				(PF16886)
944565.HMPREF9127_0281				(PF01990)
944565.HMPREF9127_0383				PF04991
944565.HMPREF9127_0384				PF04991
944565.HMPREF9127_0385				PF04991
944565.HMPREF9127_0812				(PF05684)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================