Metamenu

Effective results for Paenibacillus terrae HPL-003 (eggnog40)

Summary

Number of putative secreted proteins: 163
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 35 eukaryotic-like domains, contained in 163 proteins (10 high, 153 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
985665.HPL003_16745(PF17189) (PF02055) (PF03422)ER
985665.HPL003_06095(PF01373) (PF03423)ER
985665.HPL003_03405(PF03644)ER
985665.HPL003_00285(PF00232)(mitochondrial)
985665.HPL003_12790(PF00457)ER
985665.HPL003_21255(PF07488) (PF03648) (PF07477)
985665.HPL003_08820(PF00544)ER; (ER)
985665.HPL003_23880(PF13495)(mitochondrial)
985665.HPL003_22155(PF08279)(ER)
985665.HPL003_05920(PF03442)ER
985665.HPL003_22050(PF03422)ER
985665.HPL003_20510(PF03442)ER
985665.HPL003_10535PF07260ER
985665.HPL003_15470PF04626(mitochondrial)
985665.HPL003_07225(PF03442)ER
985665.HPL003_27575(PF00367)(ER); (mitochondrial)
985665.HPL003_15530(PF00544)ER
985665.HPL003_01730(PF00232)(ER)
985665.HPL003_08870(PF00367)(ER)
985665.HPL003_08690(PF08279)(mitochondrial)
985665.HPL003_10095PF00622ER
985665.HPL003_08535(PF00544)ER
985665.HPL003_10110PF00622ER
985665.HPL003_06850(PF01047)(ER)
985665.HPL003_10635(PF01047)(ER)
985665.HPL003_16740(PF03422)ER
985665.HPL003_22605(PF01047)ER; (ER)
985665.HPL003_10355(PF01047)mitochondrial
985665.HPL003_27060(PF00544)ER
985665.HPL003_00260(PF00367)ER
985665.HPL003_22060(PF00457)ER
985665.HPL003_06090(PF07488) (PF03648) (PF07477)
985665.HPL003_21200(PF03422)ER
985665.HPL003_17240(PF08279)ER
985665.HPL003_17810(PF01477)ER
985665.HPL003_24660(PF00367)ER; (ER)
985665.HPL003_17835(PF01047)(mitochondrial)
985665.HPL003_09110(PF08279)(mitochondrial)
985665.HPL003_12515(PF02055) (PF17189)
985665.HPL003_13070(PF00251) (PF08244)
985665.HPL003_11345(PF00251) (PF08244)
985665.HPL003_01800(PF00251) (PF08244)
985665.HPL003_21400(PF00251) (PF08244)
985665.HPL003_06740(PF08279)(ER)
985665.HPL003_21445(PF00390) (PF03949)
985665.HPL003_25585(PF00390) (PF03949)
985665.HPL003_22180(PF13204)(ER)
985665.HPL003_15075(PF00390) (PF03949)
985665.HPL003_03730(PF00390) (PF03949)
985665.HPL003_10045(PF01047)(mitochondrial)
985665.HPL003_00925(PF08279)(ER)
985665.HPL003_00365(PF00390) (PF03949)
985665.HPL003_01795(PF00251) (PF08244)
985665.HPL003_01890(PF00232)(ER)
985665.HPL003_13150(PF00390) (PF03949)
985665.HPL003_09050(PF00251) (PF08244)
985665.HPL003_27825(PF00390) (PF03949)
985665.HPL003_10925(PF02055) (PF17189)
985665.HPL003_24765(PF00390) (PF03949)
985665.HPL003_08000(PF08279)(mitochondrial)
985665.HPL003_26825(PF08279)(ER)
985665.HPL003_15925(PF00707)(mitochondrial)
985665.HPL003_24875(PF00367)
985665.HPL003_20600(PF13495)
985665.HPL003_05370(PF03422)
985665.HPL003_16350(PF01047)
985665.HPL003_19750(PF00232)
985665.HPL003_25720PF14552
985665.HPL003_10835(PF00367)
985665.HPL003_16570(PF00232)
985665.HPL003_22845(PF08279)
985665.HPL003_08735(PF00367)
985665.HPL003_01720(PF00367)
985665.HPL003_16555PF14552
985665.HPL003_21115PF14552
985665.HPL003_02950(PF00232)
985665.HPL003_21950(PF01047)
985665.HPL003_26935(PF01047)
985665.HPL003_19825(PF08279)
985665.HPL003_15360(PF00367)
985665.HPL003_26235(PF13495)
985665.HPL003_00910(PF00367)
985665.HPL003_00915(PF13204)
985665.HPL003_18075(PF01047)
985665.HPL003_20980(PF00367)
985665.HPL003_06230(PF02403)
985665.HPL003_10220(PF01047)
985665.HPL003_22210(PF07081)
985665.HPL003_16675(PF15979)
985665.HPL003_20940(PF07081)
985665.HPL003_10605(PF00232)
985665.HPL003_01235(PF00367)
985665.HPL003_12835PF14552
985665.HPL003_21195(PF03422)
985665.HPL003_10625PF14552
985665.HPL003_22055(PF00457)
985665.HPL003_01865(PF08279)
985665.HPL003_05575(PF01047)
985665.HPL003_13595(PF00251)
985665.HPL003_10645(PF08279)
985665.HPL003_07895(PF02403)
985665.HPL003_10665(PF00232)
985665.HPL003_27140(PF13495)
985665.HPL003_01825(PF00251)
985665.HPL003_14500(PF01047)
985665.HPL003_10300(PF08279)
985665.HPL003_09365(PF01047)
985665.HPL003_01355(PF01047)
985665.HPL003_21965(PF00232)
985665.HPL003_24015(PF13495)
985665.HPL003_14885(PF00367)
985665.HPL003_14070(PF01121)
985665.HPL003_01945(PF00367)
985665.HPL003_19765(PF00367)
985665.HPL003_26755(PF01047)
985665.HPL003_02470(PF01047)
985665.HPL003_24860(PF15979)
985665.HPL003_01905PF14552
985665.HPL003_22490(PF03190)not used
985665.HPL003_21525(PF00232)
985665.HPL003_25360(PF01047)
985665.HPL003_03330(PF01047)
985665.HPL003_16300(PF01121)
985665.HPL003_17555(PF01047)
985665.HPL003_01770(PF01047)
985665.HPL003_20990(PF00232)
985665.HPL003_15355(PF00232)
985665.HPL003_15435(PF00707)
985665.HPL003_00940(PF00232)
985665.HPL003_21325(PF03422)
985665.HPL003_00305(PF00367)
985665.HPL003_17510(PF08279)
985665.HPL003_06300(PF00232)
985665.HPL003_22410(PF03190)
985665.HPL003_22415(PF03190)not used
985665.HPL003_17495(PF01047)
985665.HPL003_10610(PF00367)
985665.HPL003_02175(PF01047)
985665.HPL003_09055(PF00367)
985665.HPL003_13585(PF00367)
985665.HPL003_03530(PF00367)
985665.HPL003_08890(PF01047)
985665.HPL003_21340(PF15979)
985665.HPL003_23250(PF08279)
985665.HPL003_02805(PF01047)
985665.HPL003_11350(PF01047)
985665.HPL003_01240(PF00232)
985665.HPL003_08745(PF00232)
985665.HPL003_00225(PF00232)
985665.HPL003_21205(PF03422)
985665.HPL003_13645(PF08279)
985665.HPL003_22905(PF01047)
985665.HPL003_22900(PF01047)
985665.HPL003_17275(PF07081)
985665.HPL003_21330(PF03422)
985665.HPL003_27535(PF08279)
985665.HPL003_10775(PF10435)
985665.HPL003_11700(PF01047)
985665.HPL003_22170(PF00232)
985665.HPL003_19770(PF00232)
985665.HPL003_19080(PF13281)
985665.HPL003_26530(PF00232)
985665.HPL003_26535(PF00367)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================