Effective results for Pseudonocardia asaccharolytica DSM 44247 = NBRC 16224 (refseq)

Summary

Number of putative secreted proteins: 116
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 37 eukaryotic-like domains, contained in 116 proteins (2 high, 114 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
WP_028930471.1				(PF02882) (PF00763)	(mitochondrial); (plastid)
WP_051232544.1				(PF00722)	mitochondrial; (ER)
WP_028929863.1				(PF01315)	(mitochondrial)
WP_037056956.1				(PF09130)	(mitochondrial)
WP_051232867.1				(PF00722)	ER
WP_028931369.1				(PF00274)	mitochondrial; ER
WP_028932095.1				(PF01717)	(mitochondrial)
WP_028931999.1				(PF11070)	ER
WP_037056752.1				(PF00438) (PF02773) (PF02772)
WP_028931622.1				(PF00438) (PF02773) (PF02772)
WP_051233064.1				(PF00722)	(ER)
WP_028931778.1				(PF00438) (PF02773) (PF02772)
WP_051233332.1				(PF00274)	mitochondrial
WP_051232681.1				(PF00070)	(ER)
WP_037055250.1				PF06609	mitochondrial; (mitochondrial)
WP_028931689.1				(PF12483)	ER
WP_028928879.1				(PF02577)	mitochondrial
WP_051233199.1				(PF00722)	ER
WP_028930076.1				(PF10517)	ER
WP_051233353.1				(PF00722)	ER
WP_037055784.1				(PF01927)	(mitochondrial)
WP_051233386.1				(PF10609)	(mitochondrial)
WP_051233461.1				(PF02882) (PF00763)
WP_028928805.1				(PF02728) (PF01179)
WP_028931704.1				(PF03453)	(mitochondrial)
WP_051233408.1				(PF01969)	(ER)
WP_028929251.1				(PF02882) (PF00763)
WP_028928833.1				(PF03450)	(ER)
WP_028929631.1				(PF03453)	(ER)
WP_028930454.1				(PF02728) (PF01179)
WP_028929445.1				PF03723 PF00372
WP_028931821.1				(PF02882) (PF00763)
WP_037057575.1				(PF01315)
WP_051233491.1				(PF13359)
WP_028929230.1				(PF02219)
WP_028929597.1				(PF03450)
WP_028930743.1				(PF01315)
WP_028931320.1				(PF09130)
WP_028931340.1				(PF02577)
WP_051233108.1				(PF01315)
WP_028931761.1				(PF00274)
WP_051232296.1				(PF10609)
WP_051233383.1				(PF13847)
WP_051233202.1				(PF13847)
WP_051233198.1				(PF00722)
WP_028930752.1				(PF06032)
WP_028929345.1				(PF02577)
WP_028929704.1				(PF13359)
WP_051233153.1				(PF01315)
WP_051233155.1				(PF03450)
WP_051232824.1				(PF07991)
WP_037055484.1				(PF01717)
WP_051233463.1				(PF03453)
WP_028931764.1				(PF01717)
WP_028931742.1				(PF01927)
WP_051232728.1				(PF03069)
WP_051233352.1				(PF00722)
WP_028929765.1				(PF03450)
WP_051232181.1				(PF03450)
WP_051232185.1				(PF13359)
WP_028930487.1				(PF01315)
WP_028931480.1				(PF01680)	not used
WP_051233124.1				(PF00722)
WP_028931879.1				(PF00731)
WP_028930332.1				(PF13847)
WP_028931101.1				(PF16952)
WP_028929598.1				(PF01315)
WP_051233393.1				(PF03453)
WP_051233391.1				(PF02219)
WP_037057078.1				(PF13847)
WP_028930403.1				(PF00731)
WP_051233305.1				(PF13359)
WP_028930168.1				(PF01680)
WP_028930744.1				(PF03450)
WP_028928835.1				(PF01315)
WP_051233524.1				(PF10517)
WP_051232862.1				(PF03450)
WP_051232860.1				(PF01315)
WP_028931681.1				(PF00731)
WP_028928731.1				(PF01717)
WP_028929612.1				(PF03450)
WP_028929614.1				(PF01315)
WP_037058202.1				(PF13847)
WP_028929781.1				(PF01786)
WP_051233451.1				(PF13847)
WP_051233441.1				(PF02219)
WP_028930379.1				(PF13847)
WP_028928838.1				(PF06032)
WP_051233341.1				(PF08326)
WP_028928904.1				(PF03069)
WP_051233448.1				(PF07991)
WP_028931703.1				(PF03453)
WP_028929327.1				(PF16321)
WP_051232658.1				(PF01315)
WP_051232486.1				(PF13847)
WP_028931431.1				(PF03069)
WP_028931880.1				(PF01969)
WP_028930978.1				(PF01680)
WP_028929521.1				(PF16321)
WP_028932018.1				(PF13847)
WP_028930630.1				(PF13847)
WP_051233033.1				(PF02577)
WP_037055308.1				(PF01315)
WP_051232934.1				(PF16321)
WP_051233142.1				(PF13359)
WP_037057695.1				(PF01717)
WP_028931056.1				(PF03453)
WP_028931777.1				(PF01717)
WP_037055594.1				(PF01315)
WP_028931004.1				(PF03450)
WP_028930746.1				(PF06032)
WP_028929321.1				(PF13847)
WP_028930726.1				(PF10609)
WP_028928803.1				(PF03069)
WP_037056102.1				(PF02219)
WP_028931214.1				(PF07991)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=GENOTYPE
EMAIL=
==========================================================