Metamenu

Effective results for Bifidobacterium sp. 12_1_47BFAA (refseq)

Summary

Number of putative secreted proteins: 24
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 9 eukaryotic-like domains, contained in 24 proteins (0 high, 24 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
WP_007052702.1(PF05257)ER
WP_008783443.1(PF03644)(ER); ER
WP_008783151.1(PF05257)ER
WP_008783008.1(PF09511)mitochondrial
WP_008783425.1(PF13518)(ER)
WP_008783655.1(PF08354)plastid
WP_032685276.1(PF13518)(ER)
WP_007054376.1(PF13518)
WP_050540800.1(PF04326)
WP_012472093.1(PF04326)
WP_008783141.1(PF06964)
WP_008783214.1(PF06964)
WP_008783489.1(PF13518)
WP_008782932.1(PF05257)
WP_032685272.1(PF06964)
WP_008783708.1(PF06964)
WP_008783485.1(PF06964)
WP_008782989.1(PF04326)
WP_008782730.1(PF04326)
WP_007054641.1(PF13151)
WP_008783615.1(PF06964)
WP_008783363.1(PF05257)
WP_050540801.1(PF13518)
WP_008783647.1(PF05704)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=GENOTYPE
EMAIL=
==========================================================