Metamenu

Effective results for Magnetococcus marinus MC-1 (eggnog40)

Summary

Number of putative secreted proteins: 245
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 35 eukaryotic-like domains, contained in 245 proteins (47 high, 198 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
156889.Mmc1_3327(PF07517) (PF01043)(mitochondrial); mitochondrial
156889.Mmc1_3409(PF01627) (PF00989)ER
156889.Mmc1_3402(PF01627) (PF00989)ER
156889.Mmc1_2394(PF01627) (PF00989)ER
156889.Mmc1_2953(PF01627) (PF00989)(mitochondrial)
156889.Mmc1_2606(PF04851) PF10571(mitochondrial)
156889.Mmc1_2946(PF01627) (PF00989)ER
156889.Mmc1_0077(PF00669)(mitochondrial); plastid
156889.Mmc1_3412(PF05036)(mitochondrial); mitochondrial
156889.Mmc1_2432PF03291mitochondrial
156889.Mmc1_0924(PF05036)(ER); (mitochondrial)
156889.Mmc1_1492(PF00989)ER
156889.Mmc1_0310(PF01814)mitochondrial
156889.Mmc1_2935(PF01814)(ER)
156889.Mmc1_3530(PF00989)mitochondrial
156889.Mmc1_1796(PF00989)mitochondrial
156889.Mmc1_3344(PF01627)ER
156889.Mmc1_1470(PF05036)ER
156889.Mmc1_1478(PF05036)ER
156889.Mmc1_0194(PF01814)ER
156889.Mmc1_0204(PF08238)ER
156889.Mmc1_0203(PF08238)ER
156889.Mmc1_1489(PF00989)ER
156889.Mmc1_3518PF10563ER
156889.Mmc1_2591PF03050ER
156889.Mmc1_3516(PF05116)(ER); ER
156889.Mmc1_2003(PF08238)ER
156889.Mmc1_3050PF11074mitochondrial
156889.Mmc1_3168(PF01814)ER
156889.Mmc1_1585(PF01814)ER
156889.Mmc1_3367(PF01627)ER
156889.Mmc1_3573(PF01814)ER
156889.Mmc1_1295(PF13683)(ER); ER
156889.Mmc1_3624(PF06455)ER
156889.Mmc1_0080(PF00669)(mitochondrial)
156889.Mmc1_2972(PF00989)ER
156889.Mmc1_1598(PF01627)ER
156889.Mmc1_2625(PF13683)ER
156889.Mmc1_2627(PF13683)ER
156889.Mmc1_1448(PF05036)ER
156889.Mmc1_1949(PF00989)ER
156889.Mmc1_2700(PF13683)ER
156889.Mmc1_1430(PF08238)ER
156889.Mmc1_1431(PF08238)ER
156889.Mmc1_0606(PF01814)(ER); ER
156889.Mmc1_0957(PF09458)ER
156889.Mmc1_1099(PF01627)ER
156889.Mmc1_3497(PF05036)(ER); ER
156889.Mmc1_2940(PF13476)(ER)
156889.Mmc1_1150(PF05036)(ER)
156889.Mmc1_3000(PF00989)ER
156889.Mmc1_3226(PF01627)ER
156889.Mmc1_0744(PF00989)ER
156889.Mmc1_3031(PF00989)(ER)
156889.Mmc1_2450(PF00989)ER
156889.Mmc1_2296(PF08238)ER
156889.Mmc1_1373PF03050(ER)
156889.Mmc1_0923(PF05036)(ER)
156889.Mmc1_2866PF03050(ER)
156889.Mmc1_0647(PF00989)ER
156889.Mmc1_1533(PF08238)ER
156889.Mmc1_1532(PF08238)mitochondrial
156889.Mmc1_3695(PF08238)ER
156889.Mmc1_1827PF11074mitochondrial; (mitochondrial)
156889.Mmc1_2794(PF05036)ER
156889.Mmc1_2229(PF00989)ER
156889.Mmc1_2227(PF00989)mitochondrial
156889.Mmc1_0073(PF00669)plastid
156889.Mmc1_2197(PF07517) (PF01043)
156889.Mmc1_0076(PF00669)plastid
156889.Mmc1_1300(PF04851) PF10571
156889.Mmc1_0072(PF00669)plastid
156889.Mmc1_0070(PF00669)plastid
156889.Mmc1_0059(PF00669)plastid
156889.Mmc1_3328(PF05036)(mitochondrial)
156889.Mmc1_0193(PF00989)(ER)
156889.Mmc1_3359(PF08238)(plastid)
156889.Mmc1_2175(PF07517) (PF01043)
156889.Mmc1_2770(PF04851) PF10571
156889.Mmc1_0082(PF00669)plastid
156889.Mmc1_2480(PF01627) (PF00989)
156889.Mmc1_1484(PF01627)(mitochondrial)
156889.Mmc1_2955(PF01627)(ER)
156889.Mmc1_1152(PF14252)(ER)
156889.Mmc1_2845(PF04851) PF10571
156889.Mmc1_3225(PF00669)plastid
156889.Mmc1_0062(PF00669)(mitochondrial)
156889.Mmc1_2074(PF04851) PF10571
156889.Mmc1_3737(PF04851)(mitochondrial)
156889.Mmc1_2092(PF00989)(ER)
156889.Mmc1_1235(PF04851) PF10571
156889.Mmc1_0463(PF01627) (PF00989)
156889.Mmc1_0068(PF00669)plastid
156889.Mmc1_0069(PF00669)plastid
156889.Mmc1_0064(PF00669)plastid
156889.Mmc1_0065(PF00669)plastid
156889.Mmc1_0066(PF00669)plastid
156889.Mmc1_0063(PF00669)plastid
156889.Mmc1_0322PF03050
156889.Mmc1_0321PF03050
156889.Mmc1_0474PF03050
156889.Mmc1_0071(PF00669)
156889.Mmc1_3070(PF01627)
156889.Mmc1_2787(PF13683)
156889.Mmc1_0677PF03050
156889.Mmc1_0920(PF08238)
156889.Mmc1_2231(PF01814)
156889.Mmc1_3526(PF01627)
156889.Mmc1_2307(PF01627)
156889.Mmc1_2306(PF01627)
156889.Mmc1_2121(PF00216)
156889.Mmc1_2127(PF00216)
156889.Mmc1_1251(PF00216)
156889.Mmc1_0318PF03050
156889.Mmc1_1802(PF13844)
156889.Mmc1_0262(PF05036)
156889.Mmc1_0263(PF13481)
156889.Mmc1_0442PF03050
156889.Mmc1_2932(PF14279)
156889.Mmc1_2190PF03050
156889.Mmc1_2755(PF14279)
156889.Mmc1_1790PF03050
156889.Mmc1_1244(PF00216)
156889.Mmc1_1308(PF00216)
156889.Mmc1_1304(PF13481)
156889.Mmc1_0699(PF04851)
156889.Mmc1_0691(PF10609)
156889.Mmc1_0875PF03050
156889.Mmc1_2745(PF01343)
156889.Mmc1_1271(PF16473)
156889.Mmc1_1316(PF14279)
156889.Mmc1_0421(PF14252)
156889.Mmc1_2917(PF04851)
156889.Mmc1_2910(PF00216)
156889.Mmc1_1648(PF01814)
156889.Mmc1_2596PF03050
156889.Mmc1_3515(PF05116)
156889.Mmc1_2179(PF14252)
156889.Mmc1_1261(PF01343)
156889.Mmc1_1466(PF01627)
156889.Mmc1_0400(PF01814)
156889.Mmc1_0434(PF01627)
156889.Mmc1_3639(PF16114)
156889.Mmc1_2903(PF00216)
156889.Mmc1_3164(PF01627)
156889.Mmc1_3292PF03050
156889.Mmc1_3271(PF00989)
156889.Mmc1_3360(PF08238)
156889.Mmc1_3361(PF13844)
156889.Mmc1_2761(PF00216)
156889.Mmc1_3369(PF01627)
156889.Mmc1_2766(PF13481)
156889.Mmc1_1118(PF00216)
156889.Mmc1_3576(PF01627)
156889.Mmc1_2574(PF01343)
156889.Mmc1_2806(PF16473)
156889.Mmc1_2715(PF13476)
156889.Mmc1_1286(PF13476)
156889.Mmc1_2620PF03050
156889.Mmc1_0887(PF00989)
156889.Mmc1_0742(PF05711)
156889.Mmc1_0239(PF01947)
156889.Mmc1_0092(PF00216)
156889.Mmc1_0705(PF05036)
156889.Mmc1_2816(PF01343)
156889.Mmc1_2706(PF13683)
156889.Mmc1_2632PF03050
156889.Mmc1_2630PF03050
156889.Mmc1_1482(PF01627)
156889.Mmc1_0895(PF00989)
156889.Mmc1_3109(PF01814)
156889.Mmc1_1134PF03050
156889.Mmc1_1951(PF08238)
156889.Mmc1_0770(PF00989)
156889.Mmc1_2827(PF14279)
156889.Mmc1_2824(PF00216)
156889.Mmc1_3392PF03050
156889.Mmc1_3395(PF00989)
156889.Mmc1_3394(PF00989)
156889.Mmc1_0956(PF05036)
156889.Mmc1_2046(PF01343)
156889.Mmc1_2601(PF13481)
156889.Mmc1_2942(PF00989)
156889.Mmc1_1966PF03050
156889.Mmc1_2834(PF01814)
156889.Mmc1_2837(PF00216)
156889.Mmc1_1636(PF13844)
156889.Mmc1_1702(PF10609)
156889.Mmc1_3230(PF13476)
156889.Mmc1_2057(PF14279)
156889.Mmc1_2054(PF00216)
156889.Mmc1_1565(PF01343)
156889.Mmc1_0377(PF10609)
156889.Mmc1_0571PF00277
156889.Mmc1_1976PF03050
156889.Mmc1_3711(PF05036)
156889.Mmc1_2841(PF13481)
156889.Mmc1_2285(PF01627)
156889.Mmc1_2663PF03050
156889.Mmc1_2063(PF00216)
156889.Mmc1_2066(PF00216)
156889.Mmc1_1367(PF13683)
156889.Mmc1_0293(PF13844)
156889.Mmc1_0568(PF13476)
156889.Mmc1_0108PF03385
156889.Mmc1_1982PF03050
156889.Mmc1_1984PF03050
156889.Mmc1_0630(PF01627)
156889.Mmc1_3453(PF05711)
156889.Mmc1_2454(PF01814)
156889.Mmc1_2291(PF05116)
156889.Mmc1_2184PF03050
156889.Mmc1_2070(PF13481)
156889.Mmc1_1509(PF00989)
156889.Mmc1_1504PF03050
156889.Mmc1_1179(PF01814)
156889.Mmc1_1372PF03050
156889.Mmc1_1376PF03050
156889.Mmc1_0134(PF04851)
156889.Mmc1_2867PF03050
156889.Mmc1_0649(PF04851)
156889.Mmc1_0004(PF13476)
156889.Mmc1_0003(PF13476)
156889.Mmc1_3028(PF00989)
156889.Mmc1_0914(PF00216)
156889.Mmc1_1510(PF01627)
156889.Mmc1_1834(PF01627)
156889.Mmc1_0656PF03050
156889.Mmc1_2252PF15140
156889.Mmc1_2894(PF01343)
156889.Mmc1_2650PF03050
156889.Mmc1_2653(PF04851)
156889.Mmc1_1239(PF13481)
156889.Mmc1_1358(PF13476)
156889.Mmc1_0461(PF16095)
156889.Mmc1_0790(PF04851)
156889.Mmc1_2795PF03050
156889.Mmc1_3269(PF13844)
156889.Mmc1_3265(PF13476)
156889.Mmc1_0662PF03050
156889.Mmc1_0938(PF12513)
156889.Mmc1_0930(PF05036)
156889.Mmc1_0937(PF08238)
156889.Mmc1_1224PF03050
156889.Mmc1_1326(PF01343)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================