Metamenu

Effective results for Prochlorococcus marinus str. NATL1A (eggnog40)

Summary

Number of putative secreted proteins: 130
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 91 eukaryotic-like domains, contained in 130 proteins (27 high, 103 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
167555.NATL1_05161(PF16639) (PF01333)(mitochondrial)
167555.NATL1_11001(PF13455)(mitochondrial)
167555.NATL1_14821(PF01789)ER
167555.NATL1_16461(PF00283)ER
167555.NATL1_10171(PF11152)ER
167555.NATL1_10361(PF04483)(ER)
167555.NATL1_20301(PF12046)ER
167555.NATL1_03081(PF01716)ER
167555.NATL1_05581(PF11016)ER; (ER)
167555.NATL1_05241(PF02507)ER
167555.NATL1_04051PF00421(mitochondrial)
167555.NATL1_06251(PF10716)ER
167555.NATL1_04671(PF02468)ER
167555.NATL1_06261(PF11460)ER
167555.NATL1_05651(PF13326)ER; mitochondrial
167555.NATL1_18461(PF11805)(ER)
167555.NATL1_21881(PF16166)ER
167555.NATL1_06851(PF09493)mitochondrial; (mitochondrial)
167555.NATL1_21181(PF04481)(mitochondrial)
167555.NATL1_08481(PF13911)(mitochondrial)
167555.NATL1_03111(PF04483)mitochondrial
167555.NATL1_01841(PF05421)(plastid)
167555.NATL1_13041PF01701ER; not used
167555.NATL1_01261(PF06596)(ER); not used
167555.NATL1_04071(PF05151)ER; not used
167555.NATL1_05231PF01701ER; not used
167555.NATL1_03511(PF02533)ER; not used
167555.NATL1_03311(PF02532)ER; not used
167555.NATL1_03771(PF00284) (PF00283)
167555.NATL1_18831PF00504(mitochondrial); not used
167555.NATL1_13251(PF00124)
167555.NATL1_10451(PF11210)
167555.NATL1_08471PF00421
167555.NATL1_11141PF00504not used
167555.NATL1_09871(PF11360)
167555.NATL1_16061(PF02392)
167555.NATL1_19581(PF00223)
167555.NATL1_13161PF00504not used
167555.NATL1_06881PF00421
167555.NATL1_19571(PF00223)
167555.NATL1_20241(PF02531)
167555.NATL1_01281PF00504
167555.NATL1_04191(PF12899)
167555.NATL1_16081PF00421
167555.NATL1_09491(PF11282)
167555.NATL1_12141(PF08547)
167555.NATL1_11221(PF01653)
167555.NATL1_02991(PF10063)
167555.NATL1_00731(PF13431)
167555.NATL1_16241(PF13759)
167555.NATL1_20041(PF11909)
167555.NATL1_17571(PF08855)
167555.NATL1_17071(PF13355)
167555.NATL1_13581PF00504
167555.NATL1_04041(PF01405)not used
167555.NATL1_20051(PF12617)
167555.NATL1_18841(PF04983)
167555.NATL1_01801(PF12095)
167555.NATL1_01931(PF11910)
167555.NATL1_20421(PF05996)
167555.NATL1_19711(PF13431)
167555.NATL1_21461(PF01947)
167555.NATL1_11341(PF01786)
167555.NATL1_18961(PF11998)
167555.NATL1_15551PF00421
167555.NATL1_09351(PF11947)
167555.NATL1_16741(PF13759)
167555.NATL1_20431(PF05996)
167555.NATL1_09751(PF10693)
167555.NATL1_15721(PF00124)
167555.NATL1_07211(PF11833)
167555.NATL1_15541PF00421
167555.NATL1_09971(PF09353)
167555.NATL1_07511(PF08854)
167555.NATL1_11091(PF01653)
167555.NATL1_09741(PF12159)
167555.NATL1_20081(PF10999)
167555.NATL1_08891(PF06799)
167555.NATL1_11701(PF09493)
167555.NATL1_18401(PF04839)
167555.NATL1_03031(PF00124)
167555.NATL1_03321(PF12600)
167555.NATL1_12381PF00504
167555.NATL1_06791(PF07082)
167555.NATL1_14091PF00504not used
167555.NATL1_18241(PF13759)
167555.NATL1_21121(PF01737)
167555.NATL1_10391(PF05969)not used
167555.NATL1_07831(PF05996)
167555.NATL1_15561PF00421
167555.NATL1_17521(PF11317)
167555.NATL1_20551(PF11623)
167555.NATL1_13281(PF04755)
167555.NATL1_21951(PF00862)
167555.NATL1_02171(PF10664)
167555.NATL1_04321PF00504
167555.NATL1_19601(PF00796)not used
167555.NATL1_15601PF00421
167555.NATL1_15281(PF02529)not used
167555.NATL1_08351(PF12452)
167555.NATL1_16021(PF08041)not used
167555.NATL1_03301(PF00737)
167555.NATL1_12101(PF04755)
167555.NATL1_08301(PF12527)
167555.NATL1_19591(PF02605)
167555.NATL1_13441(PF10999)
167555.NATL1_15611PF00421
167555.NATL1_16231(PF13759)
167555.NATL1_03791(PF01788)
167555.NATL1_13191PF00504
167555.NATL1_18851(PF04983)
167555.NATL1_13551PF00504not used
167555.NATL1_07241(PF12049)
167555.NATL1_07801(PF11347)
167555.NATL1_09631(PF11264)
167555.NATL1_03781PF02419not used
167555.NATL1_19001(PF01744)
167555.NATL1_02181(PF11371)
167555.NATL1_08101(PF08547)
167555.NATL1_21501(PF01653)
167555.NATL1_01611PF00504not used
167555.NATL1_09621PF03742not used
167555.NATL1_15631(PF10013)not used
167555.NATL1_12351PF00504not used
167555.NATL1_16071(PF00124)
167555.NATL1_03371(PF11378)
167555.NATL1_17411PF00504
167555.NATL1_05181(PF11267)
167555.NATL1_04211(PF02427)
167555.NATL1_04361PF00504not used

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================