Effective results for Ruminococcus champanellensis 18P13 = JCM 17042 (eggnog40)

Summary

Number of putative secreted proteins: 56
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 16 eukaryotic-like domains, contained in 56 proteins (1 high, 55 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
213810.RUM_05620				(PF02018) (PF00759)	ER
213810.RUM_15960				(PF02018) (PF00759)	mitochondrial; (mitochondrial)
213810.RUM_10780				(PF02018)	ER; (ER)
213810.RUM_23290				(PF13306)	ER
213810.RUM_20870				(PF13306)	ER
213810.RUM_12150				(PF13306)	ER
213810.RUM_22250				(PF16990)	(ER)
213810.RUM_21270				(PF16990)	ER
213810.RUM_23280				(PF13306)	ER
213810.RUM_12300				(PF00150)	ER
213810.RUM_18530				(PF02018)	ER
213810.RUM_23130				(PF02018)	ER
213810.RUM_11480				(PF13306)	ER
213810.RUM_10610				(PF13306)	ER
213810.RUM_15950				(PF00759)	ER
213810.RUM_03220				(PF02012)	ER
213810.RUM_21650				(PF00150)	(mitochondrial); (ER)
213810.RUM_15940				(PF02018)	(ER)
213810.RUM_10700				(PF13306)	ER
213810.RUM_02790				(PF02012)	ER
213810.RUM_10710				(PF13287)	ER
213810.RUM_05520				(PF00150)	ER
213810.RUM_08690				(PF00759)	(mitochondrial); mitochondrial
213810.RUM_23300				(PF13306)	ER
213810.RUM_01230				(PF00759)	(ER); ER
213810.RUM_02230				(PF00150)	ER
213810.RUM_06330				(PF00150)	mitochondrial; (mitochondrial)
213810.RUM_05540				(PF16990)	ER
213810.RUM_03400				(PF02018)	ER
213810.RUM_02800				(PF00150)	ER
213810.RUM_15270				(PF16990)	ER; (ER)
213810.RUM_08710				(PF13306)	ER
213810.RUM_18300				(PF13287)	ER
213810.RUM_15790				(PF13306)	ER
213810.RUM_10590				(PF13306)	ER
213810.RUM_09550				(PF06662)	mitochondrial; (mitochondrial)
213810.RUM_13140				(PF00150)	(ER); (mitochondrial)
213810.RUM_07020				(PF02057)	(mitochondrial)
213810.RUM_24010				(PF00759)	(ER)
213810.RUM_03950				(PF00150)
213810.RUM_05130				(PF13240)
213810.RUM_02460				(PF12437)
213810.RUM_16590				(PF12437)
213810.RUM_00640				(PF13306)
213810.RUM_14490				(PF00759)
213810.RUM_13880				(PF14311)
213810.RUM_05460				(PF02018)
213810.RUM_23840				(PF02938)
213810.RUM_21370				PF03179
213810.RUM_09650				(PF13240)
213810.RUM_06150				(PF02938)
213810.RUM_01530				(PF13151)
213810.RUM_21140				(PF13240)
213810.RUM_21420				(PF01991)
213810.RUM_05110				(PF13240)
213810.RUM_12210				(PF13240)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================